Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0183 ATGGCTGGCTCCTGGAGAGCTCGAGGATCTCTGATCGTTCTAGCAATTGTTTTCTTTGGAGGACTGTTCGCAATTTCCATTGCGAAAGAGGAAGCAACAAAATTGGGGACTGTCATTGGGATAGATTTGGGAACAACTTATTCTTGTGTTGGAGTCTACAAGAACGGACATGTAGAAATTATAGCGAATGATCAAGGGAACCGTATCACCCCTTCTTGGGTCGCTTTCACTGATAGTGAGAGATTGATCGGTGAGGCTGCGAAGAATCAAGCAGCTGTCAATCCTGAAAGGACAATCTTTGATGTCAAGAGACTTATCGGTAGAAAGTTTGATGACAAAGAGGTTCAGAAAGACATGAAGCTTGTTCCTTACAAGATTGTGAATAAGGACGGAAAGCCTTACATTCAAGTAAAGATCAAGGATGGTGAGACCAAGGTTTTCAGCCCTGAGGAAATCAGTGCTATGATTCTAACTAAGATGAAGGAAACAGCCGAAGCATTCCTTGGCAAGAAAATCAAGGACGCCGTGGTCACTGTTCCAGCTTACTTCAATGATGCCCAAAGGCAAGCAACCAAGGATGCCGGTATTATTGCTGGCCTCAACGTTGCTAGGATCATCAATGAGCCCACTGCGGCTGCCATTGCGTATGGTTTGGACAAGAAAGGTGGCGAGAAGAATATTCTCGTATTTGACCTTGGTGGTGGTACTTTTGATGTCAGTATCTTGACCATTGACAATGGTGTTTTTGAGGTTCTCGCCACAAACGGAGACACTCACTTGGGAGGTGAGGACTTTGACCAGAGAATTATGGAATACTTCATCAAATTGATTAAGAAGAAGCACGGAAAGGACATCAGCAAGGACAACAGAGCTCTTGGAAAGCTTAGGAGGGAATGTGAGCGTGCCAAGAGGGCATTGAGTAGCCAGCACCAGGTCCGCGTTGAGATTGAATCCCTCTTTGATGGCATTGATTTCTCTGAGCCATTGACCAGAGCTCGTTTTGAGGAGTTGAACAATGACTTGTTCAGAAAGACCATGGGACCAGTGAAGAAAGCCATGGAAGATGCAGGTTTGGAGAAGAACCAAATTGATGAGATTGTTCTTGTCGGTGGTAGCACCAGGATTCCCAAAGTTCAACAGCTCCTCAAGGACTACTTTGAAGGCAAAGAACCTAACAAGGGTGTGAACCCTGATGAGGCCGTTGCTTATGGTGCTGCTGTTCAAGGAAGCATCTTGAGTGGAGAAGGCGGTGAAGAGACCAAAGATATCCTTCTTCTTGACGTTGCCCCTCTTACCCTTGGAATTGAAACTGTTGGTGGAGTAATGACCAAGTTGATCCCCAGAAACACTGTCATCCCAACAAAGAAATCTCAGGTCTTCACCACTTACCAAGATCAGCAGACCACCGTCTCCATTCAGGTCTTCGAAGGTGAGAGGAGCCTCACTAAAGACTGCAGGAACCTTGGAAAGTTCGATCTAACTGGAATTCCTCCAGCACCAAGGGGTACCCCACAAATTGAGGTCACCTTTGAGGTTGATGCCAATGGTATCCTGAATGTTAAGGCCGAAGACAAGGGCACCGGTAAATCCGAGAAGATCACCATCACCAATGACAAGGGTCGGTTGAGCCAGGAGGAGATTGACCGAATGGTTCGTGAAGCCGAGGAGTTCGCTGAGGAGGATAAGAAGGTAAAGGAGAGGATTGACGCCCGTAACAGCCTGGAAACGTACATCTACAACATGAAAAACCAGATCAATGACAAGGACAAGCTTGCTGACAAGCTTGAATCTGATGAGAAGGAGAAGATCGAGACCGCCGTTAAGGATGCTCTCGAATGGCTCGATGACAACCAAAGCGCTGAGAAGGAAGACTATGAGGAGAAGCTCAAGGAGGTCGAGGCTGTCTGCAACCCCATCATCACCGCAGTCTATCAGAGGTCCGGTGGTGCTCCTGGTGGCGAATCGGCAGAAGATGATGAGTCTCACGATGAGCTTTGA 1998 47.05 MAGSWRARGSLIVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFDDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFEGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRNLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNSLETYIYNMKNQINDKDKLADKLESDEKEKIETAVKDALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGESAEDDESHDEL 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1768804 1772037 + CcPI632755_01g001830.1 Cco01g0183 169045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0183 665 FunFam Luminal-binding protein 5 571 646 - -
Cco01g0183 665 Gene3D - 39 410 - -
Cco01g0183 665 FunFam Heat shock 70 kDa 417 571 - -
Cco01g0183 665 SUPERFAMILY Actin-like ATPase domain 223 414 IPR043129 -
Cco01g0183 665 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 417 570 IPR029047 -
Cco01g0183 665 MobiDBLite consensus disorder prediction 644 665 - -
Cco01g0183 665 FunFam Heat shock 70 kDa 261 344 - -
Cco01g0183 665 Coils Coil 615 635 - -
Cco01g0183 665 Gene3D - 221 395 - -
Cco01g0183 665 Gene3D - 571 665 IPR029048 -
Cco01g0183 665 FunFam Heat shock protein 70 39 226 - -
Cco01g0183 665 SUPERFAMILY Actin-like ATPase domain 36 220 IPR043129 -
Cco01g0183 665 CDD HSPA5-like_NBD 36 410 IPR042050 -
Cco01g0183 665 PANTHER HSC70CB, ISOFORM G-RELATED 36 647 IPR050451 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006457(PANTHER)
Cco01g0183 665 Pfam Hsp70 protein 38 645 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Cco01g0183 665 ProSitePatterns Heat shock hsp70 proteins family signature 1. 41 48 IPR018181 -
Cco01g0183 665 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 652 IPR029048 -
Cco01g0183 665 Coils Coil 581 601 - -
Cco01g0183 665 Gene3D Actin; Chain A, domain 4 261 344 - -
Cco01g0183 665 ProSitePatterns Heat shock hsp70 proteins family signature 2. 229 242 IPR018181 -
Cco01g0183 665 PRINTS 70kDa heat shock protein signature 65 77 - -
Cco01g0183 665 PRINTS 70kDa heat shock protein signature 503 519 - -
Cco01g0183 665 PRINTS 70kDa heat shock protein signature 175 195 - -
Cco01g0183 665 PRINTS 70kDa heat shock protein signature 363 379 - -
Cco01g0183 665 PRINTS 70kDa heat shock protein signature 395 415 - -
Cco01g0183 665 PRINTS 70kDa heat shock protein signature 235 245 - -
Cco01g0183 665 PRINTS 70kDa heat shock protein signature 37 50 - -
Cco01g0183 665 PRINTS 70kDa heat shock protein signature 422 441 - -
Cco01g0183 665 PRINTS 70kDa heat shock protein signature 87 95 - -
Cco01g0183 665 Coils Coil 285 305 - -
Cco01g0183 665 Coils Coil 547 567 - -
Cco01g0183 665 FunFam Heat shock protein ssb1 100 155 - -
Cco01g0183 665 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 418 575 IPR029047 -
Cco01g0183 665 ProSitePatterns Heat shock hsp70 proteins family signature 3. 366 380 IPR018181 -
Cco01g0183 665 FunFam Chaperone protein HscA homolog 227 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0183 Cco-Chr1:1768804 Cco11g1154 Cco-Chr11:22565194 2.10E-231 dispersed
Cco01g0183 Cco-Chr1:1768804 Cco09g2190 Cco-Chr9:36255452 1.20E-231 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0183 K09490 - csv:101207505 1290.79