Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0191 ATGCCATTGCTACGTCCCGCCGCCACGTCGTTGCCGGAAGTCTTCTCTCCCCCCCTCGCCGATAAGGGCCCTGTCATTCCGGTCACCAATCTCGTCAAGTTCCTTGAGCGTCTTCAAGTTGTGGCTCTCAACTCCTTCGGTAAATTGGATTTCGATCTTAAATACTACGTCGATTTGTCTCTGAAATTCAATTTGAATTCTACCCAAACCGCTTTCGATGCCCTTGAACGATCCTCCAATGGCTCTGTCTCCGTCGAGAATTTGAAGGCCTTCATTACTGACTATTTCCATAGTGCTGGAGCCGACTTGGTTTACTCTGAGCCGGTTGATTTTGTCCCTCAGCCTGTTGGGTTCTTGCCTAAAGTTGAGAATGTGGAGGTTAGAGCTTGGGCTTTGGATATTCATAATTTCTGGAAGAATCTTAGCCGTAGAGTCTCCGATGATCTCATTCATCGGCCGGATACCCACACTCTGCTGCCGTTGCCGGAGCCCGTTGTCGTTCCAGGAGCCAGATTCCGGGAAGTTTACTATTGGGATTCCTATTGGATTATCAGAGGTTTGCTAGCTAGTAAAATGTATGATACTGCAAAGGGAATTGTTATTAATCTCATTTCAATGATTGATGAGTTTGGCCATGTTCTGAATGGTGCCAGATCTTACTACACCAACAGAAGTCAGCCTCCCCTTTTGAGTTCAATGGTTTATGATATATACCTTAGGACAGGGGATTTAGAGTTTGTGAGCAATGCACTCCCAGCCTTAATTAAAGAGCATAAGTTTTGGAATTCAGGATTCCATTCCATTACTGTCCGGGATGCTCCTGGTGGAAATGGAAATCACTCTTTATCTAGATACTATGCAATGTGGAACGAGCCGAGGCCAGAATCGTCACTGCTGGATGTGAAACTTGCCTCAAAGTTTGTTAATAACTATGAGAAACAACATCTATACCGGGAAATTGCATCGGCAGCCGAATCCGGTTGGGATTTCAGTACAAGATGGATGAGGGATCCAACAGACTTATCAACATTGGCTACCACTTCAATCCTGCCAGTTGATCTTAATGTATTCATACTCAAGATGGAACTGGACATTTCCAATTTGGCAAGAGCTGTTGGAGATTACTGCACGGCAGAACACTTCTTTGAGGCTTCTCTAGTCAGAAAGAAGACAATCAACTCTATTTTCTGGAATTCAGAGAAGGGACAATGGCTTGATTACTGGCTTGATAATGGCTCATACAAGGGTGCTCATACATGGGATGCTCGAAACCAGAACCAAAACGTATATGCTTCGAACTTCATTCCGTTGTGGATCGAATCATTCTACTCCAATAAGAAACAAATGAAGAAAGTCTTGAAAAGTTTACGAAACTCAGGATTATTGTGCAATGCTGGGATTGCAACTTCAATGATTAATTCAGGAGAACAATGGGATTTCCCAAATGGTTGGGCGCCAATCCAACACATGATCGTCGAGGGACTGGCAAGGTCCGGATTGAAGGAAGCAAGGGCATTGGCCGAGGACATTGCTGCGAGATGGCTTCGAACCAACTATGTAGCTTACAAGCACACAGGATATATGCATGAGAAATATGATGTCCAAAAGTGTGGAGACTTTGGTGGTGGAGGTGAATATGTCCCTCAGACTGGTTTTGGATGGTCAAATGGAGTTGTTTTGGCATTCCTCGAAGAGTTTGGATGGCCGGAAGATCAAAAGATAGACTGCTACTTAACTTATTAA 1743 44.35 MPLLRPAATSLPEVFSPPLADKGPVIPVTNLVKFLERLQVVALNSFGKLDFDLKYYVDLSLKFNLNSTQTAFDALERSSNGSVSVENLKAFITDYFHSAGADLVYSEPVDFVPQPVGFLPKVENVEVRAWALDIHNFWKNLSRRVSDDLIHRPDTHTLLPLPEPVVVPGARFREVYYWDSYWIIRGLLASKMYDTAKGIVINLISMIDEFGHVLNGARSYYTNRSQPPLLSSMVYDIYLRTGDLEFVSNALPALIKEHKFWNSGFHSITVRDAPGGNGNHSLSRYYAMWNEPRPESSLLDVKLASKFVNNYEKQHLYREIASAAESGWDFSTRWMRDPTDLSTLATTSILPVDLNVFILKMELDISNLARAVGDYCTAEHFFEASLVRKKTINSIFWNSEKGQWLDYWLDNGSYKGAHTWDARNQNQNVYASNFIPLWIESFYSNKKQMKKVLKSLRNSGLLCNAGIATSMINSGEQWDFPNGWAPIQHMIVEGLARSGLKEARALAEDIAARWLRTNYVAYKHTGYMHEKYDVQKCGDFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDQKIDCYLTY 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1833408 1836787 - CcPI632755_01g001910.1 Cco01g0191 169053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0191 580 PRINTS Glycosyl hydrolase family 37 signature 282 299 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cco01g0191 580 PRINTS Glycosyl hydrolase family 37 signature 210 228 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cco01g0191 580 PRINTS Glycosyl hydrolase family 37 signature 550 563 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cco01g0191 580 PRINTS Glycosyl hydrolase family 37 signature 349 366 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cco01g0191 580 PRINTS Glycosyl hydrolase family 37 signature 392 408 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cco01g0191 580 PRINTS Glycosyl hydrolase family 37 signature 470 486 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cco01g0191 580 PRINTS Glycosyl hydrolase family 37 signature 317 334 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cco01g0191 580 Pfam Trehalase 49 567 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cco01g0191 580 SUPERFAMILY Six-hairpin glycosidases 46 569 IPR008928 GO:0005975(InterPro)
Cco01g0191 580 ProSitePatterns Trehalase signature 2. 477 486 IPR018232 GO:0004555(InterPro)|GO:0005991(InterPro)
Cco01g0191 580 Gene3D - 37 576 IPR012341 GO:0005975(InterPro)
Cco01g0191 580 PANTHER TREHALASE 35 576 IPR001661 GO:0004555(PANTHER)|GO:0004555(InterPro)|GO:0005991(InterPro)|GO:0005993(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0189 Cco-Chr1:1827992 Cco01g0191 Cco-Chr1:1833408 1.10E-120 proximal
Cco01g0190 Cco-Chr1:1830640 Cco01g0191 Cco-Chr1:1833408 8.00E-43 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0191 K01194 - csv:101208719 1092.41