Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0191 | ATGCCATTGCTACGTCCCGCCGCCACGTCGTTGCCGGAAGTCTTCTCTCCCCCCCTCGCCGATAAGGGCCCTGTCATTCCGGTCACCAATCTCGTCAAGTTCCTTGAGCGTCTTCAAGTTGTGGCTCTCAACTCCTTCGGTAAATTGGATTTCGATCTTAAATACTACGTCGATTTGTCTCTGAAATTCAATTTGAATTCTACCCAAACCGCTTTCGATGCCCTTGAACGATCCTCCAATGGCTCTGTCTCCGTCGAGAATTTGAAGGCCTTCATTACTGACTATTTCCATAGTGCTGGAGCCGACTTGGTTTACTCTGAGCCGGTTGATTTTGTCCCTCAGCCTGTTGGGTTCTTGCCTAAAGTTGAGAATGTGGAGGTTAGAGCTTGGGCTTTGGATATTCATAATTTCTGGAAGAATCTTAGCCGTAGAGTCTCCGATGATCTCATTCATCGGCCGGATACCCACACTCTGCTGCCGTTGCCGGAGCCCGTTGTCGTTCCAGGAGCCAGATTCCGGGAAGTTTACTATTGGGATTCCTATTGGATTATCAGAGGTTTGCTAGCTAGTAAAATGTATGATACTGCAAAGGGAATTGTTATTAATCTCATTTCAATGATTGATGAGTTTGGCCATGTTCTGAATGGTGCCAGATCTTACTACACCAACAGAAGTCAGCCTCCCCTTTTGAGTTCAATGGTTTATGATATATACCTTAGGACAGGGGATTTAGAGTTTGTGAGCAATGCACTCCCAGCCTTAATTAAAGAGCATAAGTTTTGGAATTCAGGATTCCATTCCATTACTGTCCGGGATGCTCCTGGTGGAAATGGAAATCACTCTTTATCTAGATACTATGCAATGTGGAACGAGCCGAGGCCAGAATCGTCACTGCTGGATGTGAAACTTGCCTCAAAGTTTGTTAATAACTATGAGAAACAACATCTATACCGGGAAATTGCATCGGCAGCCGAATCCGGTTGGGATTTCAGTACAAGATGGATGAGGGATCCAACAGACTTATCAACATTGGCTACCACTTCAATCCTGCCAGTTGATCTTAATGTATTCATACTCAAGATGGAACTGGACATTTCCAATTTGGCAAGAGCTGTTGGAGATTACTGCACGGCAGAACACTTCTTTGAGGCTTCTCTAGTCAGAAAGAAGACAATCAACTCTATTTTCTGGAATTCAGAGAAGGGACAATGGCTTGATTACTGGCTTGATAATGGCTCATACAAGGGTGCTCATACATGGGATGCTCGAAACCAGAACCAAAACGTATATGCTTCGAACTTCATTCCGTTGTGGATCGAATCATTCTACTCCAATAAGAAACAAATGAAGAAAGTCTTGAAAAGTTTACGAAACTCAGGATTATTGTGCAATGCTGGGATTGCAACTTCAATGATTAATTCAGGAGAACAATGGGATTTCCCAAATGGTTGGGCGCCAATCCAACACATGATCGTCGAGGGACTGGCAAGGTCCGGATTGAAGGAAGCAAGGGCATTGGCCGAGGACATTGCTGCGAGATGGCTTCGAACCAACTATGTAGCTTACAAGCACACAGGATATATGCATGAGAAATATGATGTCCAAAAGTGTGGAGACTTTGGTGGTGGAGGTGAATATGTCCCTCAGACTGGTTTTGGATGGTCAAATGGAGTTGTTTTGGCATTCCTCGAAGAGTTTGGATGGCCGGAAGATCAAAAGATAGACTGCTACTTAACTTATTAA | 1743 | 44.35 | MPLLRPAATSLPEVFSPPLADKGPVIPVTNLVKFLERLQVVALNSFGKLDFDLKYYVDLSLKFNLNSTQTAFDALERSSNGSVSVENLKAFITDYFHSAGADLVYSEPVDFVPQPVGFLPKVENVEVRAWALDIHNFWKNLSRRVSDDLIHRPDTHTLLPLPEPVVVPGARFREVYYWDSYWIIRGLLASKMYDTAKGIVINLISMIDEFGHVLNGARSYYTNRSQPPLLSSMVYDIYLRTGDLEFVSNALPALIKEHKFWNSGFHSITVRDAPGGNGNHSLSRYYAMWNEPRPESSLLDVKLASKFVNNYEKQHLYREIASAAESGWDFSTRWMRDPTDLSTLATTSILPVDLNVFILKMELDISNLARAVGDYCTAEHFFEASLVRKKTINSIFWNSEKGQWLDYWLDNGSYKGAHTWDARNQNQNVYASNFIPLWIESFYSNKKQMKKVLKSLRNSGLLCNAGIATSMINSGEQWDFPNGWAPIQHMIVEGLARSGLKEARALAEDIAARWLRTNYVAYKHTGYMHEKYDVQKCGDFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDQKIDCYLTY | 580 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1833408 | 1836787 | - | CcPI632755_01g001910.1 | Cco01g0191 | 169053 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0191 | 580 | PRINTS | Glycosyl hydrolase family 37 signature | 282 | 299 | IPR001661 | GO:0004555(InterPro)|GO:0005991(InterPro) | |
Cco01g0191 | 580 | PRINTS | Glycosyl hydrolase family 37 signature | 210 | 228 | IPR001661 | GO:0004555(InterPro)|GO:0005991(InterPro) | |
Cco01g0191 | 580 | PRINTS | Glycosyl hydrolase family 37 signature | 550 | 563 | IPR001661 | GO:0004555(InterPro)|GO:0005991(InterPro) | |
Cco01g0191 | 580 | PRINTS | Glycosyl hydrolase family 37 signature | 349 | 366 | IPR001661 | GO:0004555(InterPro)|GO:0005991(InterPro) | |
Cco01g0191 | 580 | PRINTS | Glycosyl hydrolase family 37 signature | 392 | 408 | IPR001661 | GO:0004555(InterPro)|GO:0005991(InterPro) | |
Cco01g0191 | 580 | PRINTS | Glycosyl hydrolase family 37 signature | 470 | 486 | IPR001661 | GO:0004555(InterPro)|GO:0005991(InterPro) | |
Cco01g0191 | 580 | PRINTS | Glycosyl hydrolase family 37 signature | 317 | 334 | IPR001661 | GO:0004555(InterPro)|GO:0005991(InterPro) | |
Cco01g0191 | 580 | Pfam | Trehalase | 49 | 567 | IPR001661 | GO:0004555(InterPro)|GO:0005991(InterPro) | |
Cco01g0191 | 580 | SUPERFAMILY | Six-hairpin glycosidases | 46 | 569 | IPR008928 | GO:0005975(InterPro) | |
Cco01g0191 | 580 | ProSitePatterns | Trehalase signature 2. | 477 | 486 | IPR018232 | GO:0004555(InterPro)|GO:0005991(InterPro) | |
Cco01g0191 | 580 | Gene3D | - | 37 | 576 | IPR012341 | GO:0005975(InterPro) | |
Cco01g0191 | 580 | PANTHER | TREHALASE | 35 | 576 | IPR001661 | GO:0004555(PANTHER)|GO:0004555(InterPro)|GO:0005991(InterPro)|GO:0005993(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0189 | Cco-Chr1:1827992 | Cco01g0191 | Cco-Chr1:1833408 | 1.10E-120 | proximal | |
Cco01g0190 | Cco-Chr1:1830640 | Cco01g0191 | Cco-Chr1:1833408 | 8.00E-43 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0191 | K01194 | - | csv:101208719 | 1092.41 |