Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0198 ATGGCTTCCTCACCTCCTTCTAAACGCCGTCGTAAAAACCTCACTTTTGATGATGCCTTTGAGACCTTACTTTCAACTGCAACCTCTTCCTCCGTTAATCGATTGTCCCCTGTCGTCGTTTTCGCTCACGGTGCTGGTGCCCCTTCTTCTTCTGAATGGATGATCAGATGGAAGGATATGTTAGGCAAGGCACTGCACGCTGCTGAAGTTGTTACTTTCGATTATCCATACATTTCTGGAGGGAGGAAATCTCCTCCAAAGGCAGAAAAATTGGTTCCATATCATGTAGAAATTGTCAAAAGGACGATTGCAAAGTATCCTGGGCACCCCTTGATTTTGGCGGGTAAATCAATGGGTTCAAGAGTAAGTTGCATGGTAGCTTGTGAGGAAGACATTCATGCTTCTGCAATTATTTGCTTGGGGTATCCCTTGAAGGGCTTGAAAGGGGATGTGCGAGACCTGACGTTATTGCAAGTTACCGTTCCTATCATGTTTGTACAGGGTAGCAGGGATGCTCTGTGTCCTCTAGAGAAGTTGGAGGATATCCGGAAGAGGATGAAATCAATTAGTGGGTTACATGTTATTGATGGTGGTGACCATTCTTTCCAGATTTCAAAGAAATACCTTCAAGGCAAAGGTTCAAGTAAAGATGAAGCCGAAAATCTTGCTGCTCAGGCCCTTGCAACTTTTGTTTCTGGGTGTCTTGGATGGCTGTAG 717 44.91 MASSPPSKRRRKNLTFDDAFETLLSTATSSSVNRLSPVVVFAHGAGAPSSSEWMIRWKDMLGKALHAAEVVTFDYPYISGGRKSPPKAEKLVPYHVEIVKRTIAKYPGHPLILAGKSMGSRVSCMVACEEDIHASAIICLGYPLKGLKGDVRDLTLLQVTVPIMFVQGSRDALCPLEKLEDIRKRMKSISGLHVIDGGDHSFQISKKYLQGKGSSKDEAENLAAQALATFVSGCLGWL 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1893728 1896112 + CcPI632755_01g001980.1 Cco01g0198 169060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0198 238 PANTHER TESTIS DEVELOPMENT PROTEIN PRTD 26 235 IPR026555 -
Cco01g0198 238 FunFam Alpha/beta-Hydrolases superfamily protein 10 217 - -
Cco01g0198 238 Pfam Alpha/beta hydrolase domain 38 231 IPR046879 -
Cco01g0198 238 Gene3D alpha/beta hydrolase 36 212 IPR029058 -
Cco01g0198 238 SUPERFAMILY alpha/beta-Hydrolases 32 205 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0198 K07020 - - csv:101210114 446.817
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g123 . . . . . . . Bma14g00631 . . Cma02g00906 Cma15g01276 Car02g00656 Car15g01150 . . Cpe05g00803 . . . . . . . . . . . . . . Cone8ag0248 Cone12ag0255 . . . Csa05g00208 Chy09g01290 . . . Bda07g00460 . . Bpe11g00637 . . . Cmo02g00913 Cmo15g01345 . . . . . Cpe13g00113 Bhi12g00151 . . Lac11g2003 Hepe06g1482 . Lcy12g1573 Cla01g00192 Cam01g0198 Cec01g0192 Cco01g0198 Clacu01g0194 Cmu01g0190 Cre09g2318 Lsi09g00179 . . Cme09g01835
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009503 1 1 1 1 0 1 2 1 1 1 0 1 1 1 1 2 1 2 2 1 1 1 1 1 1 0 1 1 2 1 32