Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0209 ATGGAAGCTCTGTGGATTTTCAGCTTCGTTGTGGTTATGGGGTTGGTTTTTTCGCCAATTAATGGCGACCCAGTTGAAGACAAGCGAGCTCTGCTTGATTTTGTCAAGAATCTCCCTCACTCTCGCTCTCTTAATTGGAATGCGGCTTCACCGGTTTGTCATTACTGGACTGGTATAACTTGCAGTCAAGATGAATCTCGTGTTATAGCCGTTCGATTGCCCGGAGTTGGCTTTCACGGCCCGATTCCAGCGAATACTCTTAGCCGGCTATCGGCACTGCAAATATTGAGTCTCAGATCCAATCGTATAACGGGGAATTTCCCTTTGGATTTCTCGAATCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTCTGGAAGAATCTCACCTTTGTGAATCTCTCTAATAATGGCTTCAATGGCCGTATTCCACATTCGCTTTCTAATCTGACAGCACTCACAGGTTTGAATCTGGCAAACAACTCTCTTTCAGGAGAAATACCTGACCTCCAAATCCCCAGATTGCAGGTTCTGGATTTGTCTAACAACAATCTGAGTGGGAGTGTGCCTAAATCTTTACAGAGATTTCCAAAGTCTGTATTTGTAGGCAATGACATATCTTTTGGAAGTTCTTTATTAAACAATCCTCCCGTACCCGCGCCGTTGCCTGTGTCGAATGAAAAGCCAAAGAATGCTGGTGGGCTTGGAGAAGCAGCATTGTTAGGAATTATAATTGCTGGTGGTATTTTGGGGCTTCTGGCATTTGGCTTTCTAATCCTTGTTTGCTTCTCAAGAAGGAAGAGGGAAGATGAATATTCTGGGGATCTTCAGAAAGGTGGAATGTCGCCGGAAAAAGTGATATCAAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAGGGGTGTCATTATGCATTTGACTTGGAGGATTTGTTGAGAGCTTCTGCTGAGGTCTTGGGGAAGGGAACTTTTGGTACTGCATATAAAGCAATTCTAGAGGATGCCACCACAGTTGTTGTTAAGAGGTTGAAGGATGTAAGCGCTGGGAAACGCGATTTCGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCACGAGAATGTGGTTGAATTGAAGGCTTACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTTTGGTCAGGGAAGCGTCTCGGCCATGTTACACGGTAAACGCGGAGAGGAAAAAACTCCATTAGATTGGGACACTAGACTGAGAATTGCAGTTGGTGCAGCACGAGGAATCGCCCGTGTCCATGCCGAAAATGGTGGGAAACTCGTCCATGGAAATGTGAAATCGTCAAACATCTTTCTGAACTCTCAACAGTATGGATGTGTGTCTGATCTTGGACTAGCAACTATAACAAGCTCACTCTCTCCACCTATATCCCGCGCTGCTGGTTACCGAGCCCCAGAAGTGACAGACACTCGCAAGGCGACACAAGCTTCAGATGTTTTCAGCTTCGGTGTCGTGCTCCTCGAGCTTCTAACCGGAAAGTCTCCAATTCATGCAACAGGCGGCGAAGAGATTGTTCATTTGGTTAGATGGGTTCATTCAGTTGTCCGAGAGGAGTGGACAGCTGAGGTATTTGATGTAGAGCTGATGAGATATCCCAACATAGAGGAAGAAATGGTTGAGATGTTACAAATAGCCTTATCATGTGTAGCCAGGATACCTGACCAGAGACCCAAAATGGCGGAAATTGTGAAGATGATCGAAAGTGTTCGACCAATGGAAGCCGAGAATCGACCTTCTTCCACGAACCGATCTGAAAGTTTGATGCCGCCGCAAGCTGTTGAGACAGAAAATTCAACCCCTCAGCAAAACAACAAACACGCAGGAGGATCTCAAGAGGTTCAACTCTTTTGGATTTTGGTGATGGCTTCGAAGCGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCTACGTCTTGCAGTGCAGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCTCCTGACAGTCCTTATGCAGGAGGAGTGTTTCTTGTCAACATTCATTTCCCTCCAGATTATCCGTTTAAACCACCCAAGGTTGCATTCAGAACAAAAGTCTTTCATCCCAATATCAACAGCAACGGTAGCATATGCCTCGACATACTTAAGGAACAGTGGAGTCCTGCACTAACCATTTCCAAGGTGTTACTTTCGATCTGCTCACTGCTAACGGACCCGAATCCTGATGATCCTTTGGTGCCAGAGATTGCACACATGTATAAGACTGACAGAAGCAAGTACGAGGCAACCGCCAGAAGCTGGACCCAGAAGTATGCTATGGGTTAG 2391 45.46 MEALWIFSFVVVMGLVFSPINGDPVEDKRALLDFVKNLPHSRSLNWNAASPVCHYWTGITCSQDESRVIAVRLPGVGFHGPIPANTLSRLSALQILSLRSNRITGNFPLDFSNLSNLSYLYLQFNNFSGPLPSNFSVWKNLTFVNLSNNGFNGRIPHSLSNLTALTGLNLANNSLSGEIPDLQIPRLQVLDLSNNNLSGSVPKSLQRFPKSVFVGNDISFGSSLLNNPPVPAPLPVSNEKPKNAGGLGEAALLGIIIAGGILGLLAFGFLILVCFSRRKREDEYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLMVYDFFGQGSVSAMLHGKRGEEKTPLDWDTRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMAEIVKMIESVRPMEAENRPSSTNRSESLMPPQAVETENSTPQQNNKHAGGSQEVQLFWILVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1983287 1995613 - CcPI632755_01g002090.1 Cco01g0209 169071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0209 796 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Cco01g0209 796 Pfam Ubiquitin-conjugating enzyme 653 789 IPR000608 -
Cco01g0209 796 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Cco01g0209 796 Pfam Leucine Rich Repeat 93 114 IPR001611 GO:0005515(InterPro)
Cco01g0209 796 Pfam Leucine Rich Repeat 116 136 IPR001611 GO:0005515(InterPro)
Cco01g0209 796 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Cco01g0209 796 MobiDBLite consensus disorder prediction 602 636 - -
Cco01g0209 796 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Cco01g0209 796 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 649 795 IPR000608 -
Cco01g0209 796 FunFam Probable inactive receptor kinase RLK902 24 183 - -
Cco01g0209 796 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 722 737 IPR023313 -
Cco01g0209 796 CDD UBCc 651 790 IPR000608 -
Cco01g0209 796 PANTHER OS05G0588300 PROTEIN 9 610 IPR050994 -
Cco01g0209 796 MobiDBLite consensus disorder prediction 599 636 - -
Cco01g0209 796 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
Cco01g0209 796 Gene3D Ribonuclease Inhibitor 137 222 IPR032675 -
Cco01g0209 796 Gene3D Ribonuclease Inhibitor 26 136 IPR032675 -
Cco01g0209 796 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cco01g0209 796 Gene3D Ubiquitin Conjugating Enzyme 646 796 IPR016135 -
Cco01g0209 796 SUPERFAMILY UBC-like 644 795 IPR016135 -
Cco01g0209 796 FunFam pollen receptor-like kinase 1 295 400 - -
Cco01g0209 796 SMART ubc_7 652 795 - -
Cco01g0209 796 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0209 796 FunFam Ubiquitin-conjugating enzyme 28, E2 649 796 - -
Cco01g0209 796 SUPERFAMILY L domain-like 37 208 - -
Cco01g0209 796 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g0209 796 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524(InterPro)
Cco01g0209 796 Gene3D Transferase(Phosphotransferase) domain 1 402 619 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0064 Cco-Chr1:491410 Cco01g0209 Cco-Chr1:1983287 4.80E-68 dispersed
Cco01g0066 Cco-Chr1:501709 Cco01g0209 Cco-Chr1:1983287 7.60E-154 dispersed
Cco01g0209 Cco-Chr1:1983287 Cco11g0287 Cco-Chr11:2900088 4.30E-135 dispersed
Cco07g0945 Cco-Chr7:21636604 Cco01g0209 Cco-Chr1:1983287 2.80E-17 dispersed
Cco02g2551 Cco-Chr2:37840573 Cco01g0209 Cco-Chr1:1983287 1.00E-47 transposed
Cco04g0803 Cco-Chr4:23360717 Cco01g0209 Cco-Chr1:1983287 8.90E-211 transposed
Cco06g2021 Cco-Chr6:30227134 Cco01g0209 Cco-Chr1:1983287 4.90E-32 transposed
Cco07g0611 Cco-Chr7:9244609 Cco01g0209 Cco-Chr1:1983287 7.80E-49 transposed
Cco07g1103 Cco-Chr7:24584244 Cco01g0209 Cco-Chr1:1983287 2.30E-37 transposed
Cco09g1047 Cco-Chr9:10017898 Cco01g0209 Cco-Chr1:1983287 3.90E-78 transposed
Cco04g0662 Cco-Chr4:21039520 Cco01g0209 Cco-Chr1:1983287 7.00E-23 transposed
Cco01g0209 Cco-Chr1:1983287 Cco05g1027 Cco-Chr5:9037388 1.10E-167 wgd
Cco01g0209 Cco-Chr1:1983287 Cco07g1549 Cco-Chr7:29522734 3.00E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86492 PF07714 PK_Tyr_Ser-Thr 2.30E-34 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0209 - - - 0.0