Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0221 ATGGAAAGAACATCGCAAGCCCTTGTATGTTTAGCTTTGGTCTTTATGATTTCATTCTTTTCAACTTATTCCTTACCATTATCAACTCGGGGAAGATGGATCATTGATTCTAAAACAGGACGTCGAGTGAAGCTTGTGTGTGTGAATTGGCCTTCTCATACCCAAAGCATGTTGGCAGAAGGCTTAAATCACAGACCACTAAAAGAACTTGCTGACGAGGCAATCAAATTGAAGTTCAATTGTGTGCGTCTCACATATGCAACCCACATGTTCACTCGATATGCTAATAGGACAATTGCAGAGAATTTCGACCTTTTAGATTTGAAACAAGCCAAAGCAAGATTGGCTCAATATAACCCTTTTGTGTTGAATAAGACTATTGTGGAAGCCTATGAAGCAGTTGTTGATGTGCTTGGGGCGAGTGGTTTAATGGTGATTGTTGACAATCATATCAGTCAACCAAGATGGTGTTGTTCTCTTGATGATGGCAATGGCTTCTTTGGAAATCGCAATTTTGACCCTCAAGAATGGCTACAAGCAATGAGCTTACGAAATGAGATACGAGGAACAAGGGAAAATGCAAATGACTGGAACAACTATGTAACTGAAGGAGTAACAACAATCCACCAGATAAACCCGACTGTTTTAGTGATTGTTTCAGGCCTAAATTATGATAATGATCTTCGATGCTTAAAGGAAAAGCCCTTGACTGTAAACACCTTAGACAATAAATTGGTTTTTGAGGTGCACTTGTATTCTTTTAGTGGAGATGAAAGTAGGTATGTACAACAACCATTGAATGACATTTGTGCAAATGTCATCAACGATTTTGTAGATCATGCATGGTTTGTAATGGAAGGACCAAATCCATTTCCTTTATTTGTTAGCGAATATGGGTATGATCAAAGAGGGACCAATGATGCTGAAAATCGGTTCATGAGTTGCTTCACTGCTCATCTTGCTAAGAAAGACATGGATTGGGCACTATGGACTTGGCAAGGCAGCTATTATTATAGGGAAGGTGAAGCAGAGCCTACAGAAGTATTTGGAGTTCTCAACCCCAATTGGACTCAAATTCAAAATCCTAACTTTACTAAGAAGTTCCAACTATTACAGATGATGTTGCAAGATCCAAATTCCAATACATCTTCTTATGTTATGTACCATCCACAAAGTGGCCAATGTGTCCAAGCTTCAAATGACAATAGTGAATTTTTTTTGAGCAATTGCTCCATCTCAAGTCGGTGGAGTCACGGTGATGATGGCTCTCCAATCAAGATGACAACAAATGGTTTGTGTTTAAAGGCTAATGGAGAAGGCCTTCGAGCATCCCTCTCAAGTGATTGTTTGGGTCAACAGAGTGTTTGGAGAGCAATTTCTAACAGTAAGCTTCATTTGGCCACTATCACTCAAGATGGGAAGAGCCTTTGCTTGCAAGTTGAGAGCTCCAAATCTTCAAAAATTATGACCAACTCTTGTATTTGCACCAATGGCGAACCAAACTGCCTTCAAGACACCCAAAGTCAATGGTTTGAACTTGTTGCAACCAACACATTGTAA 1560 39.62 MERTSQALVCLALVFMISFFSTYSLPLSTRGRWIIDSKTGRRVKLVCVNWPSHTQSMLAEGLNHRPLKELADEAIKLKFNCVRLTYATHMFTRYANRTIAENFDLLDLKQAKARLAQYNPFVLNKTIVEAYEAVVDVLGASGLMVIVDNHISQPRWCCSLDDGNGFFGNRNFDPQEWLQAMSLRNEIRGTRENANDWNNYVTEGVTTIHQINPTVLVIVSGLNYDNDLRCLKEKPLTVNTLDNKLVFEVHLYSFSGDESRYVQQPLNDICANVINDFVDHAWFVMEGPNPFPLFVSEYGYDQRGTNDAENRFMSCFTAHLAKKDMDWALWTWQGSYYYREGEAEPTEVFGVLNPNWTQIQNPNFTKKFQLLQMMLQDPNSNTSSYVMYHPQSGQCVQASNDNSEFFLSNCSISSRWSHGDDGSPIKMTTNGLCLKANGEGLRASLSSDCLGQQSVWRAISNSKLHLATITQDGKSLCLQVESSKSSKIMTNSCICTNGEPNCLQDTQSQWFELVATNTL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2143720 2145580 - CcPI632755_01g002210.1 Cco01g0221 169083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0221 519 Gene3D Glycosidases 27 374 - -
Cco01g0221 519 Pfam Cellulase (glycosyl hydrolase family 5) 64 333 IPR001547 GO:0000272(InterPro)|GO:0004553(InterPro)
Cco01g0221 519 SUPERFAMILY Ricin B-like lectins 384 493 IPR035992 -
Cco01g0221 519 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 9 517 - -
Cco01g0221 519 ProSiteProfiles Lectin domain of ricin B chain profile. 382 513 - -
Cco01g0221 519 SUPERFAMILY (Trans)glycosidases 26 361 IPR017853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0221 K01179 - - csv:101207450 879.782
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0221 Cco-Chr1:2143720 Cco02g0104 Cco-Chr2:1182396 2.20E-260 dispersed
Cco01g0221 Cco-Chr1:2143720 Cco01g0224 Cco-Chr1:2156042 4.20E-06 proximal
Cco01g0220 Cco-Chr1:2141451 Cco01g0221 Cco-Chr1:2143720 6.30E-18 tandem
Cco01g0221 Cco-Chr1:2143720 Cco01g0222 Cco-Chr1:2148733 4.80E-151 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g59 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0270 . . . . . Chy09g01270 . . . Bda07g00471 . . Bpe11g00649 . . . Cmo02g01448 . . . . . . . Bhi12g00175 . . . . . Lcy12g1597 Cla01g00215 Cam01g0222 Cec01g0213 Cco01g0221 Clacu01g0216 Cmu01g0210 Cre09g2298 Lsi09g00202 . . Cme09g01813
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000102 1 5 0 0 1 17 0 16 15 11 16 15 7 9 8 11 14 2 0 12 12 11 2 7 10 18 6 7 5 3 241