Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0238 ATGGAGCCAGCAGGTTTATTCCAATCCTCCATGAGTTTTTTCTCCGATCAAGAACTCTGCTACGCCGATATCCTCACTCCTCAAGAGGTTGTGGCCAGAATTCAAGTAGCTGTCCTCAACTTCCTCAGAATTCTCAGCTCCCCCACTCCAGCCATCTCAAATCTTCCTCTGATTGATCGAAGATCGAGCAATAGCCGAGTGAATCAAGGAATTTTAATGGATGCTTCATGGATTTTCCTTTCGCACTCCTTTTGTACGAGGTCTTTGATGAGAGCCAATGCTGCCAAGGCCTTTGTTAGAGTGTGGAAGCTGATGGAGATGTGCTCTCAGATTCTGATTCAGGATAAGCGAGTGACGCAGAGGGAGCTCTTCTACAAGCTACTCTGTAATTCACCTGCTTATTTTCCGACTCAGTTGCATGTCAATAGGACAGTTCAAGATGTTGTAGCCTTACTTCGATGTAGCCGTTACAGCCTTGGCATTATGGCATCTAGCAGGGGACTTGTTGCCGGCCGTCTACTGGTGCAGGAGCCAGAGCAAGAAGTTGTGGACTGTACTGCCTGTGGGTCTTCTGGATATGCCATTTCAGGTGACTTGGACTTGTTGCAGAAGTTGACTCTGAAGACTGATGCTCGATACGTAATTGTAATTGAAAAGCATGCAATATTCCAGCGGTTGGCAGAGGATCACGTTTTCAATCACATTCCCAGTATTCTTATCACAGCCAAAGGATATCCAGACATAGCAACAAGGTACTTTCTTCACAGAATTAGCAAAACGTTTCCTCTTCTGCCAATATTCGGCCTTGTTGATTGGAACCCTGCGGGATTGGCTATATTATGCACCTTCAAGTATGGAAGTATAGGGATGGGCTTGGAGGCGTACAGATATGCTTGCAATGTTAAATGGTTGGGAGTACGAGGAGACGATTTACAACTGATACCACAAGAATCTCTGGTTCCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCAGAAATATTACAGGAGAATTATCGACAAGAGCTGACCTTAATGGTTGAGAGAGGGCAAAAGGCTGAACTTGAAGCTTTATACCACAATGGATTTGATTATTTGGAGAAAAAACTGAAGTGGCACGTTCATCAATCAAAGCTTTCAGCTGCTTCAGCTTTAAAGATACCCCAGAAGTCGTCATACTGCGGCGTCACTGGAGTCTTCATCGTCACTTTCATCAAAGGAAGTCTTTCTCCTTTGAAAGTAGCAGCCAGCATTCTCATGGGGTCTATGCTCGGTGACCTGCCGTCATATGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCGACTCCTTCTAAGATGATTCCTGCAACCTATCATCCAACCCACAGTAGGACCCTTCCCCCACCAGATCAGGTTATAAATACAGAGGCCAAAAATATACTTATACGACACATTTATCAGCATACAGAAGAGAAGGTTAGTAAAAGAAAGATGTCAAGAACAAAGAGACCTGCAGCCGAGCATCCCGTGCCCGAGCATGGAAGCAAGCAACCAAGAGCATCTACTACCAACACTTCAAATTGA 1584 45.45 MEPAGLFQSSMSFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDRRSSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQRELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLVQEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHVFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLMVERGQKAELEALYHNGFDYLEKKLKWHVHQSKLSAASALKIPQKSSYCGVTGVFIVTFIKGSLSPLKVAASILMGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTEEKVSKRKMSRTKRPAAEHPVPEHGSKQPRASTTNTSN 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2259281 2266537 + CcPI632755_01g002380.1 Cco01g0238 169100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0238 527 PRINTS DNA topoisomerase VI subunit A family signature 238 259 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cco01g0238 527 PRINTS DNA topoisomerase VI subunit A family signature 138 155 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cco01g0238 527 PRINTS DNA topoisomerase VI subunit A family signature 271 287 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cco01g0238 527 PRINTS DNA topoisomerase VI subunit A family signature 156 171 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cco01g0238 527 PRINTS DNA topoisomerase VI subunit A family signature 214 231 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cco01g0238 527 Pfam Type IIB DNA topoisomerase 97 161 IPR013049 GO:0003677(InterPro)|GO:0003824(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0006259(InterPro)
Cco01g0238 527 MobiDBLite consensus disorder prediction 486 527 - -
Cco01g0238 527 CDD TOPRIM_TopoIIB_SPO 212 369 IPR034136 -
Cco01g0238 527 Gene3D - 18 164 IPR036388 -
Cco01g0238 527 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 27 381 IPR002815 GO:0000228(PANTHER)|GO:0000706(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)|GO:0007131(PANTHER)|GO:0042138(PANTHER)
Cco01g0238 527 MobiDBLite consensus disorder prediction 438 470 - -
Cco01g0238 527 SUPERFAMILY DNA topoisomerase IV, alpha subunit 95 370 IPR036078 GO:0003677(InterPro)|GO:0005694(InterPro)
Cco01g0238 527 Pfam Topoisomerase 6 subunit A/Spo11, Toprim domain 213 372 IPR034136 -
Cco01g0238 527 MobiDBLite consensus disorder prediction 438 458 - -
Cco01g0238 527 Pfam Det1 complexing ubiquitin ligase 426 491 IPR018276 -
Cco01g0238 527 FunFam Meiotic recombination protein SPO11-2 20 164 - -
Cco01g0238 527 Gene3D - 165 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0238 K10878 - - csv:101213596 677.167
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g42 . . . . . . . . . . Cma02g01426 Cma15g01253 . Car15g01130 . . Cpe05g00360 . . . . . . . . . . . . . . Cone8ag0277 Cone12ag0284 . . . Csa05g00241 Chy09g01261 . . . . . . Bpe11g00670 . . . Cmo02g01460 Cmo15g01318 . . . . . Cpe13g00132 Bhi12g00316 . . . . . . Cla01g00228 Cam01g0235 Cec01g0226 Cco01g0238 Clacu01g0230 Cmu01g0223 Cre09g2286 Lsi09g00218 . . Cme09g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006132 0 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 39