Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0243 ATGTCCCCAGTTCGTAGATTCATGGCTGCATCCAACTCTCTGTCGCTGAAGCACGGCCTCTCTTTCTGCTGCCCGCACTCTGGTTCCTTTTCCAGACCTCAACAGCCTTCTTCCGTTTCCTTCAGAGGCTTCCGGAGAAGCTACGTTGCTGCCTCCACGGATTTCGCCAACGATAATAGAGAGTTTGTGATTGTTGGTGGTGGAAATGCTGCTGGTTATGCAGCTCGTACTTTCGTCGAGCACGGGATGGCGGATGGACGGCTTTGTATAGTATCTAAGGAGGCATTTGCGCCGTACGAGCGTCCGGCTCTGACGAAAGGTTACTTGTTTCCTCTTGATAAAAAACCAGCTCGCTTGCCTGGGTTTCATACTTGTGTTGGAACTGGTGGGGAAAGGCAAACTCCAGAATGGTACAAGGATAAAGGTATTGAGACGTTTTATCAAGATCCAGTTATGGGTATTGATATAAAAAACCAAACCCTTAGAACTACTTCAGGCAAACTGCTCAAGTATGGAGCCCTTTTTATAGCAACAGGATGTACGGCCTCAAGATTTCCAGATAAGATCGGTGGTGAGCTACCTGGTGTTCACTACATCCGAGATGTCGCAGATGCAGATTCACTAATCTCCTCATTGGAGAAAGCTAAAAAGGTGGTGGTTGTTGGTGGTGGTTATATCGGTATGGAGGTCGCTGCAGCAGCTGTTGGTTGGAAACTTGATACAACAATCATATTTCCCGAGAATCATCTATTGCAAAGACTTTTTACTCCTTCACTGGCCAGGAAGTATGAAGAATTTTACCAGGAGAATGGTGTCAAATTCATAAAGGGGGCCTCCATAAAAAATTTGGAAGCTGGTGCAAATGGTCGGGTCACTTCTGTTAGACTTGCAGATGGATCTTCCATCGAAGCAGACACGGTAGTAATAGGCATTGGTGCAAAGCCTGCTGTCGGTCCGTTTGAGCAAGTGGGATTGAATAGCACTGTTGGCGGTATACAGGTTGATGGCCTGTTCAGAACAAAAATTCCAGGAATCTTTGCAGTTGGAGATGTGGCAGCATTCCCATTAAAGCTGTATGATCGTGTAGCTCGGGTAGAACATGTGGATCATGCTCGTCGATCGGCTCAGCATTGTGTCAAAGCATTACTAACTGCTCATACTCAAACATACGATTATCTTCCATACTTCTACTCAAGGGTGTTTGAATACGAAGGGAGCCCTAGAAAAATATGGTGGCAATTTTTTGGGGATAATGTTGGTGAGACAGTTGAAATTGGGAACTTCGATCCTAAGATTGCTACTTTTTGGATTGATTCTGGTAAATTAAAAGGGGTTCTTCTTGAAAGCGGAAGTCCTGAGGAATTTGAACTTCTTCCTAAGCTCGCAAGGTTCCAGCCTTCGGTTGATAAAGCTAAACTTCAAAATGCGTCTTCAGTTGAGGAAGCACTGGATATTGCCCGAGCATCTTTGCAGCAGGTAAAGGGAGGAATGTGCCGGCGAATGACAGGAAGAAACCTTGATGGCATCACGGGACCCGTAGCAGCTTTCGCTTAG 1554 45.88 MSPVRRFMAASNSLSLKHGLSFCCPHSGSFSRPQQPSSVSFRGFRRSYVAASTDFANDNREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCVGTGGERQTPEWYKDKGIETFYQDPVMGIDIKNQTLRTTSGKLLKYGALFIATGCTASRFPDKIGGELPGVHYIRDVADADSLISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLARKYEEFYQENGVKFIKGASIKNLEAGANGRVTSVRLADGSSIEADTVVIGIGAKPAVGPFEQVGLNSTVGGIQVDGLFRTKIPGIFAVGDVAAFPLKLYDRVARVEHVDHARRSAQHCVKALLTAHTQTYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFELLPKLARFQPSVDKAKLQNASSVEEALDIARASLQQVKGGMCRRMTGRNLDGITGPVAAFA 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2291879 2302384 - CcPI632755_01g002430.1 Cco01g0243 169105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0243 517 Pfam Pyridine nucleotide-disulphide oxidoreductase 62 374 IPR023753 GO:0016491(InterPro)
Cco01g0243 517 Gene3D - 395 482 IPR016156 -
Cco01g0243 517 PRINTS FAD-dependent pyridine nucleotide reductase signature 171 189 - -
Cco01g0243 517 PRINTS FAD-dependent pyridine nucleotide reductase signature 217 235 - -
Cco01g0243 517 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Cco01g0243 517 PRINTS FAD-dependent pyridine nucleotide reductase signature 304 320 - -
Cco01g0243 517 PRINTS FAD-dependent pyridine nucleotide reductase signature 330 352 - -
Cco01g0243 517 Gene3D - 63 378 IPR036188 -
Cco01g0243 517 PANTHER APOPTOSIS-INDUCING FACTOR 1 61 476 IPR050446 GO:0005737(PANTHER)|GO:0016651(PANTHER)
Cco01g0243 517 PRINTS Pyridine nucleotide disulphide reductase class-I signature 217 242 - -
Cco01g0243 517 PRINTS Pyridine nucleotide disulphide reductase class-I signature 61 83 - -
Cco01g0243 517 PRINTS Pyridine nucleotide disulphide reductase class-I signature 345 352 - -
Cco01g0243 517 PRINTS Pyridine nucleotide disulphide reductase class-I signature 305 319 - -
Cco01g0243 517 SUPERFAMILY FAD/NAD(P)-binding domain 61 403 IPR036188 -
Cco01g0243 517 Gene3D - 185 312 IPR036188 -
Cco01g0243 517 Pfam Monodehydroascorbate reductase 3-like, C-terminal domain 393 473 IPR048618 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0243 K08232 - - csv:101214011 926.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0243 Cco-Chr1:2291879 Cco04g1198 Cco-Chr4:27431104 3.70E-103 dispersed
Cco01g0243 Cco-Chr1:2291879 Cco10g1906 Cco-Chr10:32618760 1.80E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34