Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0247 | ATGGCTACTAAAGAATCGAGTTCTACCACTCCCACTGAAGGCAAGATTAAAGGGGTTCTTACCCATGGTGGCCGATATGTGCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCGGCTAAGTATGTCCCTCCTTTGCGACCTATTGGTAGAGGTGCCTATGGTCTTGTTTGTGCTGCTGTAAATTCAGAGACACATGAAGAGGTTGCCATCAAGAAAATTGGAAATGCATTTGATAACATAATCGATGCCAAGAGAACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACATGAAAATATTATCGCTATCAGAGACATCATTAGGCCGCCAAAAAGAGAGGTTTTTAATGATGTGTATATTGTTTACGAATTGATGGACACTGATCTTCATCAAATAATTCGTTCTGACCAACCACTGACAGACGATCATTGCCAGTACTTTTTGTATCAGTTGTTGCGTGGGCTGAAATATGTACATTCAGCCAAGGTCCTGCACCGTGATCTCAAGCCAAGCAACCTGCTTCTGAATGCAAATTGCGACCTTAAAATTGGAGACTTTGGATTGGCAAGGACGACTTCTGAAACTGACTTCATGACTGAATATGTGGTTACTCGCTGGTACCGAGCACCAGAGTTGCTCCTCAATTGTTCAGAGTACACTGCTGCTATCGATGTTTGGTCTGTGGGATGCATACTTGGTGAGATAATGACCAGAGAACCTCTCTTCCCTGGAAAAGACTATGTTCATCAACTCAGACTTATAACTGAGCTACTAGGATCACCAGATGATGCGAGCCTAGGATTTCTCCGAAGTGATAATGCTCGAAGATACGTCAAGCAGCTTCCACAGTACAGGAAACAACAATTCTCAGCTAGATTTCCCAACGTGTCTCCAGCTGCCCTGGATCTTCTTGAAAAGATGCTCGTATTTGATCCGAACAAACGCATTACAGTGGAGGAGGCACTTTGTCATCCATACTTGCAATCTCTTCACGACATCAATGACGAGCCGGTCTGTGCCAGGCCTTTCAATTTTGATTTTGAGCAACCGTCGTGCACTGAAGAGCATATTAAAGAACTCATTTGGAAAGAATCCGTCAGGTTCAATCCTGACGAATCCGCTAGGAGGACAACTCTTTGTGTTTGA | 1152 | 43.14 | MATKESSSTTPTEGKIKGVLTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQPLTDDHCQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSARFPNVSPAALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCARPFNFDFEQPSCTEEHIKELIWKESVRFNPDESARRTTLCV | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2338710 | 2342804 | + | CcPI632755_01g002470.1 | Cco01g0247 | 169109 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0247 | 383 | Gene3D | Phosphorylase Kinase; domain 1 | 26 | 366 | - | - | |
Cco01g0247 | 383 | Pfam | Protein kinase domain | 47 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0247 | 383 | Gene3D | Transferase(Phosphotransferase) domain 1 | 127 | 356 | - | - | |
Cco01g0247 | 383 | FunFam | Mitogen-activated protein kinase | 127 | 356 | - | - | |
Cco01g0247 | 383 | SUPERFAMILY | Protein kinase-like (PK-like) | 46 | 337 | IPR011009 | - | |
Cco01g0247 | 383 | ProSitePatterns | MAP kinase signature. | 78 | 181 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0247 | 383 | ProSitePatterns | Protein kinases ATP-binding region signature. | 49 | 73 | IPR017441 | GO:0005524(InterPro) | |
Cco01g0247 | 383 | CDD | STKc_TEY_MAPK | 36 | 372 | - | - | |
Cco01g0247 | 383 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 36 | 365 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Cco01g0247 | 383 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 165 | 177 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco01g0247 | 383 | ProSiteProfiles | Protein kinase domain profile. | 43 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0247 | 383 | SMART | serkin_6 | 43 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0247 | 383 | FunFam | Mitogen-activated protein kinase | 28 | 137 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0247 | Cco-Chr1:2338710 | Cco03g0219 | Cco-Chr3:2267317 | 1.30E-169 | dispersed | |
Cco07g0935 | Cco-Chr7:21460458 | Cco01g0247 | Cco-Chr1:2338710 | 3.10E-118 | transposed | |
Cco08g1664 | Cco-Chr8:28095412 | Cco01g0247 | Cco-Chr1:2338710 | 1.50E-114 | transposed | |
Cco01g0247 | Cco-Chr1:2338710 | Cco06g0350 | Cco-Chr6:3933151 | 8.30E-185 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86493 | PF00069 | Pkinase | 8.30E-71 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0247 | K20600 | - | csv:101214254 | 778.859 |