Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0247 ATGGCTACTAAAGAATCGAGTTCTACCACTCCCACTGAAGGCAAGATTAAAGGGGTTCTTACCCATGGTGGCCGATATGTGCAGTATAATGTTTATGGTAACTTGTTTGAGGTTTCGGCTAAGTATGTCCCTCCTTTGCGACCTATTGGTAGAGGTGCCTATGGTCTTGTTTGTGCTGCTGTAAATTCAGAGACACATGAAGAGGTTGCCATCAAGAAAATTGGAAATGCATTTGATAACATAATCGATGCCAAGAGAACATTGAGAGAAATTAAGCTTCTTTGCCACATGGAACATGAAAATATTATCGCTATCAGAGACATCATTAGGCCGCCAAAAAGAGAGGTTTTTAATGATGTGTATATTGTTTACGAATTGATGGACACTGATCTTCATCAAATAATTCGTTCTGACCAACCACTGACAGACGATCATTGCCAGTACTTTTTGTATCAGTTGTTGCGTGGGCTGAAATATGTACATTCAGCCAAGGTCCTGCACCGTGATCTCAAGCCAAGCAACCTGCTTCTGAATGCAAATTGCGACCTTAAAATTGGAGACTTTGGATTGGCAAGGACGACTTCTGAAACTGACTTCATGACTGAATATGTGGTTACTCGCTGGTACCGAGCACCAGAGTTGCTCCTCAATTGTTCAGAGTACACTGCTGCTATCGATGTTTGGTCTGTGGGATGCATACTTGGTGAGATAATGACCAGAGAACCTCTCTTCCCTGGAAAAGACTATGTTCATCAACTCAGACTTATAACTGAGCTACTAGGATCACCAGATGATGCGAGCCTAGGATTTCTCCGAAGTGATAATGCTCGAAGATACGTCAAGCAGCTTCCACAGTACAGGAAACAACAATTCTCAGCTAGATTTCCCAACGTGTCTCCAGCTGCCCTGGATCTTCTTGAAAAGATGCTCGTATTTGATCCGAACAAACGCATTACAGTGGAGGAGGCACTTTGTCATCCATACTTGCAATCTCTTCACGACATCAATGACGAGCCGGTCTGTGCCAGGCCTTTCAATTTTGATTTTGAGCAACCGTCGTGCACTGAAGAGCATATTAAAGAACTCATTTGGAAAGAATCCGTCAGGTTCAATCCTGACGAATCCGCTAGGAGGACAACTCTTTGTGTTTGA 1152 43.14 MATKESSSTTPTEGKIKGVLTHGGRYVQYNVYGNLFEVSAKYVPPLRPIGRGAYGLVCAAVNSETHEEVAIKKIGNAFDNIIDAKRTLREIKLLCHMEHENIIAIRDIIRPPKREVFNDVYIVYELMDTDLHQIIRSDQPLTDDHCQYFLYQLLRGLKYVHSAKVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLGFLRSDNARRYVKQLPQYRKQQFSARFPNVSPAALDLLEKMLVFDPNKRITVEEALCHPYLQSLHDINDEPVCARPFNFDFEQPSCTEEHIKELIWKESVRFNPDESARRTTLCV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2338710 2342804 + CcPI632755_01g002470.1 Cco01g0247 169109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0247 383 Gene3D Phosphorylase Kinase; domain 1 26 366 - -
Cco01g0247 383 Pfam Protein kinase domain 47 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0247 383 Gene3D Transferase(Phosphotransferase) domain 1 127 356 - -
Cco01g0247 383 FunFam Mitogen-activated protein kinase 127 356 - -
Cco01g0247 383 SUPERFAMILY Protein kinase-like (PK-like) 46 337 IPR011009 -
Cco01g0247 383 ProSitePatterns MAP kinase signature. 78 181 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0247 383 ProSitePatterns Protein kinases ATP-binding region signature. 49 73 IPR017441 GO:0005524(InterPro)
Cco01g0247 383 CDD STKc_TEY_MAPK 36 372 - -
Cco01g0247 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 36 365 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco01g0247 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g0247 383 ProSiteProfiles Protein kinase domain profile. 43 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0247 383 SMART serkin_6 43 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0247 383 FunFam Mitogen-activated protein kinase 28 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0247 Cco-Chr1:2338710 Cco03g0219 Cco-Chr3:2267317 1.30E-169 dispersed
Cco07g0935 Cco-Chr7:21460458 Cco01g0247 Cco-Chr1:2338710 3.10E-118 transposed
Cco08g1664 Cco-Chr8:28095412 Cco01g0247 Cco-Chr1:2338710 1.50E-114 transposed
Cco01g0247 Cco-Chr1:2338710 Cco06g0350 Cco-Chr6:3933151 8.30E-185 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86493 PF00069 Pkinase 8.30E-71 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0247 K20600 - csv:101214254 778.859