Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0248 ATGGCGACGGTGATTAAGGCCGTTACAACCGCCGCGCCGTACCGGTTTAATTACCGGAGATTGTTTCAACGGCCTGCCGGAGCTCCGTCTCCACGGCTGGGTTTTCCGAAGCGTTTTCCATGGCCGTGTTTTGCGAAACAGAGCTCGAGAAGATTGCTGGCCATGAAGAAGAAGAAAAGTGAAGAAGATGAAGTGGTTAAGGAATTAAAGATGACTGTGCAGGAAAAAATGGCGATGAAGAAAGCGGAAAGAAATGCTTATTTGGTAGCTGCAATTGTTTCGAGCTTTGGGATCACTTCAATGGCCGCCATCGCTGTTTATTACAGATTCTCTTGGCAAATGGAGGGCAAAGAGTTTCCAATTTTGGAAATGTTCGGCACTTTTGCACTATCCATCGGCGCTGCTGTGGGAATGGAATTCTGGGCGAGATGGGCTCACAAAAAGCTATGGCATGCTTCGTTATGGGATATGCACGAGTCTCATCATAGGGCGAGGGTTGGAGCTTTTGAATTGAACGATGTGTTTGCAATTATAAACGCTGTCCCAGCCATTGCTCTTCTTTCTTTTGGCTTCTTCAATCAAGGCTTCTTTCCCGGCCTCTGTTTTGGTGCCGGTTTGGGAATTACGGTGTTTGGGATTGCCTACATGTTCGTCCACGATGGCCTCGTGCACCGTCGTTTCCCTGTGGGTCCTATAGCCGCTGTCCCCTACTTACGACGTGTCGCTGCTGCCCATCATATCCATCACACGGATAAATTCGACGGAGTTCCGTACGGTTTGTTTTTAGGACCCAAGGAATTGGAGGAAGTGGATGGCGAAGAAGAGCTGCAGAAGGAAATTAAAAAGAGAAGCAAGTGTCTAGGTCTTGGGCCTAAGCCCAACGGGCCATTTTGGGTTGGCCGATTGAAGAATCAAGCCCTCCTATATTTTCAGCCACGTAACTTGTTCCACGAAAGTTCCCGAAAGTTCCCACTCCCTAATTCCAAAACCAGCAACTTCGATTCGCGCCAATCTCAACACTGGACCGGCGACGATTGCAGAATATCGGACTTAACTGCTGAAGGTTGTAAAATATATATATATATGCGTGGTGCAGCTGCCTTATTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCTGAAAGGATCATGGGGTAGTCTGGCCTCATCAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACCAAAGAGAAAGCAGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCTCCCCTTCTTGGTCCATTGGCTGTTTTCTCATTGTTAGAAACGTATTTGAGTCGTGATGGAAATGAAGACTAG 1347 47.51 MATVIKAVTTAAPYRFNYRRLFQRPAGAPSPRLGFPKRFPWPCFAKQSSRRLLAMKKKKSEEDEVVKELKMTVQEKMAMKKAERNAYLVAAIVSSFGITSMAAIAVYYRFSWQMEGKEFPILEMFGTFALSIGAAVGMEFWARWAHKKLWHASLWDMHESHHRARVGAFELNDVFAIINAVPAIALLSFGFFNQGFFPGLCFGAGLGITVFGIAYMFVHDGLVHRRFPVGPIAAVPYLRRVAAAHHIHHTDKFDGVPYGLFLGPKELEEVDGEEELQKEIKKRSKCLGLGPKPNGPFWVGRLKNQALLYFQPRNLFHESSRKFPLPNSKTSNFDSRQSQHWTGDDCRISDLTAEGCKIYIYMRGAAALLTVKNKSKLIHPLKGSWGSLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETYLSRDGNED 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2346070 2353711 + CcPI632755_01g002480.1 Cco01g0248 169110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0248 448 Pfam Fatty acid hydroxylase 134 261 IPR006694 GO:0005506(InterPro)|GO:0008610(InterPro)|GO:0016491(InterPro)
Cco01g0248 448 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 54 285 IPR045019 GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016119(PANTHER)|GO:0016123(PANTHER)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0248 Cco-Chr1:2346070 Cco05g0997 Cco-Chr5:8798636 1.80E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0248 K15746 - csv:101214325 465.307