Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0252 ATGGCTGGAGAGCTTTGTGAAGGAGGAGAAAAATCAAACGAGATGGTAGTTGGAGGAGGGTTTTTTTACAATTCCAATTCAAATTCAAACAACATCCCAAATCAGTTCACAAATCAGATCCAAACCGGGTTCGGTTCCACCACCGAACACGCGGCGGAGATGTTCAATGAGTCGAGTGGTGGCGGTGGTGGTGACGACGATGAGTCGTTTCATCAGAATATGATGGTGGTTGGACCGTGGGGGACGACAACGACGACGATGGCGACGACGGATTCTTCTTTAAGATGTGTGTTTCCATGTGAACCAAATGAAAGACCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCTTCTAATCCTTCTTCTATCGGCTTACAATCTTTTGAACTAAGACAACAACACCAATCATCTTTCCCCATTTTTCACCTTAGAAACTCAAGGTTCTTAATCCCAACTCAAGAGCTTCTTTATGAGTTTTGTAGCCTTGGAATCACCAATAACATCAATCATTCTTCTTCCTCACCAAAACAAAAACATGGCTCTTCTTCTACCACTTTCTCTCTTCAATCACTTGATTTCATGGACTTGCAAAAGAGGAAAACTAAACTTTTCTCCATGCTTGAAGAGGTTGAAAGAAGGTATAGGCATTATTGCGAGCAAATGAAGGGGGTGGTGGCGTCATTCGAAGCGGTGGCGGGGAATGGGGCGGCGAGGGTGTACTCGGCGTTAGCGTCGAAAGCGATGTCGAGGCATTTTAGGAGCCTAAAAGATGGGATTGTGGGGCAAATTCAAGCCACAAGAAAGGCAATGGGAGAAAAGGATTCAATTGCACCTGGTACAACAAGAGGAGAAACACCAAGGCTTAGAGTGATTGATCAAGCTTTAAGGCAACAAAGAGCTTTCCATCAAATCAGCATCATGGAAAGCCATCCATGGCGCCCTCAACGTGGCCTCCCCGAGCGTTCTGTTTCGGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTGGATAAACATATTTTAGCTCGCCAAACTGGTCTATCCAGAAGCCAGGTGTCAAATTGGTTCATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTAGAAGAGATGTATTTGGAAGAAACAAAGGAACAAGAGGAAGAGATTGACAACAGTTTCAACAACATGAACAATAATGCCAACAACTCTTTTGATGGGGTGGGGGATTTCGACGACGAAATCGACGGTCATCGATCAATCGTGACACGACTCGAGGATCAAAAGCCAACTCCGGATCAACTCCTAAGAATAGACTCGGAATGTCTCTCTTCAATCATCTCTAATAACACGGAGAAGAATGACTCAAGAACGATGAAAACCCTGCAAAACCACCACCTCCATGAAAACCACAACCACACCTTCGGACGGGTTGTGAGTGACGCCTTCGGCACAGTAGAGCTCGACTTCTCGTCCTACAACCACCATACCGGTAGTGGTGGAGTTACGTACCCTAACAACAACAACAACAACAATCAACATTTCAACAACGGCAATGGTGGGGGCGTGTCGTTGACATTAGGGTTACAGCAGCACGCAGCAGCTGCGGGGAACGGCAACAGAGGGGTGAGTATTGCCTTCTCTCCGGCAGCAGCCGCGGCACAAAGCTCCCTTTTCTTCACAAGAGATCACATAGAAGAATGCCAACCAGTTCAGTATTCCCTTTTAGATGGAGAAACTCAGAATCTTCCATACAGAAATTTGATGGGTGCTCAATTGCTTCATGATTTGGCTGGATAA 1794 45.93 MAGELCEGGEKSNEMVVGGGFFYNSNSNSNNIPNQFTNQIQTGFGSTTEHAAEMFNESSGGGGGDDDESFHQNMMVVGPWGTTTTTMATTDSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRQQHQSSFPIFHLRNSRFLIPTQELLYEFCSLGITNNINHSSSSPKQKHGSSSTTFSLQSLDFMDLQKRKTKLFSMLEEVERRYRHYCEQMKGVVASFEAVAGNGAARVYSALASKAMSRHFRSLKDGIVGQIQATRKAMGEKDSIAPGTTRGETPRLRVIDQALRQQRAFHQISIMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQEEEIDNSFNNMNNNANNSFDGVGDFDDEIDGHRSIVTRLEDQKPTPDQLLRIDSECLSSIISNNTEKNDSRTMKTLQNHHLHENHNHTFGRVVSDAFGTVELDFSSYNHHTGSGGVTYPNNNNNNNQHFNNGNGGGVSLTLGLQQHAAAAGNGNRGVSIAFSPAAAAAQSSLFFTRDHIEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2370519 2373591 - CcPI632755_01g002520.1 Cco01g0252 169114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0252 597 Pfam Associated with HOX 142 258 IPR006563 -
Cco01g0252 597 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 94 399 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco01g0252 597 SMART HOX_1 311 375 IPR001356 GO:0003677(InterPro)
Cco01g0252 597 Coils Coil 378 398 - -
Cco01g0252 597 CDD homeodomain 311 372 IPR001356 GO:0003677(InterPro)
Cco01g0252 597 FunFam BEL1-like homeodomain protein 4 314 376 - -
Cco01g0252 597 SMART prehox3 136 260 IPR006563 -
Cco01g0252 597 SUPERFAMILY Homeodomain-like 312 377 IPR009057 -
Cco01g0252 597 Pfam Homeobox KN domain 328 367 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco01g0252 597 ProSiteProfiles 'Homeobox' domain profile. 308 371 IPR001356 GO:0003677(InterPro)
Cco01g0252 597 Gene3D - 314 376 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0252 Cco-Chr1:2370519 Cco02g1393 Cco-Chr2:26181962 1.10E-77 dispersed
Cco01g0252 Cco-Chr1:2370519 Cco10g1818 Cco-Chr10:31809157 6.40E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58555 PF07526 POX 1.50E-40 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0252 - - - 0.0