Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0255 ATGGGCTTCCCTGCAAGCTACACTGAGCTTCTTCTCCCTAAGCTCGTTATCCACGTATTCTCCTTCCTCGGCTTCCTCCGGAAGCTTATCTCCCTCCTCTTCCGCCTTCTTGGCCTCCAAGATTTCCTCGAACCCGACATTCCTTGGTCCAATCACCCCGATTCCTTCCCCACCGGACCCTTCGCCGACCTCGATCCTCTCTCCGCTGCCGTTCTCCGTGAGATTCTCCCAGTCATCAAGTTTTCCGAGCTTCTGGATCCGCCGGAGAGCTGCGCTGTGTGCCTCTACGAGTTCGAGGCCGAAGATGAGATCCGCCGCCTTGCTAACTGCCGTCACATCTTCCACCGCGGATGCCTCGATCGGTGGATCGGTTACGGTCAGAGAACTTGCCCGCTCTGCCGGACGGTGTTTATTCCGCCCGATTTGCGGAGTGGTGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTTGAAGCTCTCCTCAGTGATTCTTCATCTTCAAGTCTTCTCGCTGCTGGTTTGTAG 534 55.24 MGFPASYTELLLPKLVIHVFSFLGFLRKLISLLFRLLGLQDFLEPDIPWSNHPDSFPTGPFADLDPLSAAVLREILPVIKFSELLDPPESCAVCLYEFEAEDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGCNFDDRLWEDSEIFEALLSDSSSSSLLAAGL 177
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 2430192 2430725 + CcPI632755_01g002550.1 Cco01g0255 169117
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0255 177 PANTHER RING ZINC FINGER PROTEIN-RELATED 7 141 - -
Cco01g0255 177 Pfam Ring finger domain 90 134 IPR001841 -
Cco01g0255 177 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Cco01g0255 177 SMART ring_2 91 133 IPR001841 -
Cco01g0255 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 137 IPR013083 -
Cco01g0255 177 SUPERFAMILY RING/U-box 72 140 - -
Cco01g0255 177 SMART ringv_2 90 134 IPR011016 GO:0008270(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0255 Cco-Chr1:2430192 Cco04g1800 Cco-Chr4:32886090 5.10E-12 dispersed
Cco01g0255 Cco-Chr1:2430192 Cco05g0178 Cco-Chr5:1401879 4.80E-34 wgd
Cco01g0255 Cco-Chr1:2430192 Cco06g0353 Cco-Chr6:3978058 2.40E-41 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0255 K16281 - csv:101215533 296.975