Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0260 ATGGGAGGTTGCTGCTGCTGTTCTTCAAAAAGAACAGAATCAAATATTGCACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAGCATGTTCCCTTGTCATCTCCACTTAGAACTCCCCCAGCATTTTCAACAGGGCTTTTAGTTGACACGAATCTTGATACATCAATCCCAGACACTTATAGATCACCTCCTTTGCCTATGCCATATGATGTTGTTTTAACAAATCCACATATTTCATCCGTGGCTCAAGAAATTGGCAGCAATAAGAATGATGCTGCAGCTCAGACAACAAATCCCGATACGATTCAAGAAGCAGCATGCATAAATACTCGGGAAACTTCAACCAAATTTGAAGGCATCGATGAATCAGACTGCAAGAAGCATACAGATTTTGAAGTGGACACATTAAAGGAATCTGAAATTGAACTTTCAAAAGGAGTAGAATCTGTGGTCTTACCTATCGAAGAAGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGATGGGGAGAATCCAAAACTTACCACAAAATGCGAGCATCATTTTCATCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTGTGCGATCAGGAAATGGTTTTTAGCTCTCCAATTGATTAG 639 40.53 MGGCCCCSSKRTESNIAPGYYYYPRASEEHVPLSSPLRTPPAFSTGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTNPHISSVAQEIGSNKNDAAAQTTNPDTIQEAACINTRETSTKFEGIDESDCKKHTDFEVDTLKESEIELSKGVESVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCDQEMVFSSPID 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2485461 2487090 + CcPI632755_01g002600.1 Cco01g0260 169122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0260 212 CDD RING-H2_AIRP1-like 157 205 - -
Cco01g0260 212 SUPERFAMILY RING/U-box 155 208 - -
Cco01g0260 212 SMART ring_2 161 201 IPR001841 -
Cco01g0260 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Cco01g0260 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 207 - GO:0004842(PANTHER)|GO:0005829(PANTHER)
Cco01g0260 212 FunFam Putative E3 ubiquitin-protein ligase RHB1A 137 206 - -
Cco01g0260 212 Pfam Ring finger domain 160 201 IPR001841 -
Cco01g0260 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 208 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0260 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0509 Cco-Chr11:5346566 Cco01g0260 Cco-Chr1:2485461 3.00E-17 transposed
Cco01g0260 Cco-Chr1:2485461 Cco05g0182 Cco-Chr5:1426080 6.70E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g12 . . . . . Bpe07g00103 . Bma14g00607 . . Cma02g01003 Cma15g01239 . Car15g01116 . . Cpe05g00349 . . . . . . . . . . . . . . . Cone12ag0296 . . . Csa05g00265 Chy09g01243 . . . Bda07g00483 . . Bpe11g00660 . . . Cmo02g01472 Cmo15g01303 . . . . . Cpe13g00146 Bhi12g00284 . . . . . . Cla01g00249 Cam01g0254 Cec01g0246 Cco01g0260 Clacu01g0252 Cmu01g0242 Cre09g2267 Lsi09g00240 . . Cme09g01778
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004601 2 3 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41