Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0263 ATGGCCCGGTTGATTCTACCATGCAAGAGCGTGGGATTGGCAAGGAATAACCTCTTGGGTTTGGTTTCATCTGCTCCTGTTCGAGCTGCACACCGTTGTGCTAATTCATTTGGAACTTCAGTCAAACGTAGCACTAGACAGAGGCCCTTATTTACTTCACAGGTGAAATCTGGATTGAATTATCGCTTTCCATATCGTTTGCCATTTGGGGCTAAACAAGCTAGTAGGAAGCTGATTTGTTCAGTTGCAACCGAAGCATTGCAAGAAAAAGCTGAAGAAAACAAAATGGGTACACCTAAAGAGATATTTTTGAAAGATTACAAGATGCCCGATTACTATTTTGACACGGTCGATTTGAAATTTTTGTTGGGTGAGGAGAAAACAATTGTCAATTCAAGAATAACAGTGTTCCCTAGAGTTGAAGGATCTAAATTTCCTCTGGTTTTGAATGGTGATGATGTGAAGTTGATTTCAATCAAGATTAACAGTGAGGACCTCAAGGAGGAAGATTACGTTCTGGACTCCCGCCATTTGACAATCCTATCACCGCCAACTGGTTCTTTTACTTTGGAAATTGTCAATGAGATATGTCCTCAGAACAACACATCTTTAGAGGGACTCTATAAATCAACTGGAAATTTCTGCACACAATGTGAAGCTGAAGGTTTCCGGAAGATCACATTTTACCAGGACCGTCCAGATATAATGGCAAAGTACACATGTCGCATAGAAGCCGATAAGTCACTGTACCCAGTGCTGCTGTCTAATGGAAATCTTATAGATCAGGGTGATTTAGAGGGTGGAAAACATTATGCCCTTTGGGAGGATCCCTTTAAGAAACCCTGCTACTTGTTTGCCTTAGTAGCTGGCAAGTTGGTTAGCAGAGACGATGTTTTTATTACTCGTTCGGGTAGGAAAATCTCCTTGAAGATATGGACTCCAGCTGAAGACTTACCCAAGACTGAGCACGCCATGTATTCTTTGAAGGCAGCTATGAAATGGGATGAAGATGTCTTTGGATTAGAATATGATCTGGATCTCTTCAACATTGTGGCTGTTCCAGATTTCAACATGGGAGCCATGGAAAACAAGAGTCTGAATATTTTCAATTCAAAACTTGTCTTGGCATCTCCGGAGACTGCTTCTGATGCAGATTATGCTGCCATATTAGGAGTGATTGGCCATGAGTATTTCCACAACTGGACTGGCAACAGGGTGACATGTCGTGATTGGTTCCAGCTGAGCCTGAAGGAAGGCCTTACTGTTTTCCGTGATCAGGAATTTTCATCTGACATGGGAAGTCGTGCTGTGAAAAGAATTGCTGATGTTTCAAGACTTAGGAACTATCAGTTTCCACAGGATGCTGGTCCCATGGCTCATCCAGTTCGACCACATTCCTATATCAAGATGGACAATTTTTACACAGGAAATTATGATCTGACACGGGTCCTGTACCAACTTGAACATGCAGTGACGGTCTACGAGAAGGGTGCTGAAGTCGTGAGGATGTACAAGACCTTATTGGGAAGTCAAGGATTTAGAAAAGGCATGGATCTTTACTTTGAGAGACATGATGGTCAAGCTGTTACCTGTGAAGATTTCTATGCTGCAATGCGAGATGCAAATGATGCCGATTTTGCTAACTTCTTATTATGGTACTCTCAAGCTGGGACCCCTCAAGTCAAAGTTACATCTTCTTACAATTCTGATGGTCGTACGTTCTCTCTGAAGTTCAGGCAAGATGTTCCACCAACTCCTGGGCAGCCAGTTAAAGAGCCAATGTTTATACCTGTCGCTCTTGGTTTGTTAGACTCATCTGGTAATAATTTGCGTCTTTCCTCCATATATCACGATGGGGTGTTGCAGTCTATATCTGAAAACAATCAACCAGTCTACTCTACAGTCCTCAGGCTGACTAAGAAAGAAGAAGAGTTTGTCTTCTCGGATATACCTGAGCGGCCAGTTCCTTCTTTGTTTAGGGGCTACAGTGCTCCTGTCCGTCTGGAAACAGATCTAAACAACGATGATCTATTTTTCCTTCTTGCCAATGATTCCGATGAGTTCAACCGTTGGGAGGCTGGACAAGTGCTGGCACGGAAACTGATGCTCCAACTGGTGGCTGATCACCAACAAAATAAGACGTTGGTTCTTAACTCGAAGTTTGTTGAGGGTCTGAGATCCATACTTTCTGACTCGAGCTTGGATAAAGAATTCATTGCCAAAGCAATAACTCTTCCTGGCGAAGGGGAAATAATGGACATGATGGAGGTTGCAGATCCTGATGCTGTTTATGCTGTTCGAAGTTTCATTAGGAAGCAACTGGCCAATGCATTGAAAGCAGAGCTTCTCACTGCAGTAGAAAACAATAGGAGTTCAGAAGCATATGTGTTTAACCATCCTGAAATGGCCAGGCGTGCTTTGAAGAATACTGCTCTTGCATATCTTGCATTAGTTGAGGATGCAGAGATTGCCAGCCTTGTGCTTAATGAGTATAAGAATGCCTCAAATATGACTGACCAATTTGCAGCTTTGGTGGCTATAGCTCAGAAGCCAGGTGAAACTCGTGATGAGATTCTTGCCGACTTCTATGCCAAGTGGCAGCATGACTATTTGGTTGTCAATAAATGGCTTGCTCTTCAAGCCATGTCAGATATTCCTGGTAACATTGAGAATGTTCAGAACCTCCTAAATCACAAGGCGTTCGACCTGCGAAATCCAAACAAGGTATATTCTTTGATTGGAGGTTTCTGTGGATCAATCGTCAACTTTCACGCAAAGGATGGATCGGGATACAAATTCTTGGGAGACATTGTCCTGCAACTAGACAAAATTAATCCCCAGGTTGCCTCTCGAATGGTCTCTGCCTTCTCGAGATGGAGGCGTTACGACGAACACCGGCAAAATCTTGCCAAGGCACAACTGGAGAAGATATTGTCTGCCAATGGACTGTCTGAAAATGTGTTTGAAATTGCATCAAAAAGCTTAGCAGCTTGA 2994 43.02 MARLILPCKSVGLARNNLLGLVSSAPVRAAHRCANSFGTSVKRSTRQRPLFTSQVKSGLNYRFPYRLPFGAKQASRKLICSVATEALQEKAEENKMGTPKEIFLKDYKMPDYYFDTVDLKFLLGEEKTIVNSRITVFPRVEGSKFPLVLNGDDVKLISIKINSEDLKEEDYVLDSRHLTILSPPTGSFTLEIVNEICPQNNTSLEGLYKSTGNFCTQCEAEGFRKITFYQDRPDIMAKYTCRIEADKSLYPVLLSNGNLIDQGDLEGGKHYALWEDPFKKPCYLFALVAGKLVSRDDVFITRSGRKISLKIWTPAEDLPKTEHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRAVKRIADVSRLRNYQFPQDAGPMAHPVRPHSYIKMDNFYTGNYDLTRVLYQLEHAVTVYEKGAEVVRMYKTLLGSQGFRKGMDLYFERHDGQAVTCEDFYAAMRDANDADFANFLLWYSQAGTPQVKVTSSYNSDGRTFSLKFRQDVPPTPGQPVKEPMFIPVALGLLDSSGNNLRLSSIYHDGVLQSISENNQPVYSTVLRLTKKEEEFVFSDIPERPVPSLFRGYSAPVRLETDLNNDDLFFLLANDSDEFNRWEAGQVLARKLMLQLVADHQQNKTLVLNSKFVEGLRSILSDSSLDKEFIAKAITLPGEGEIMDMMEVADPDAVYAVRSFIRKQLANALKAELLTAVENNRSSEAYVFNHPEMARRALKNTALAYLALVEDAEIASLVLNEYKNASNMTDQFAALVAIAQKPGETRDEILADFYAKWQHDYLVVNKWLALQAMSDIPGNIENVQNLLNHKAFDLRNPNKVYSLIGGFCGSIVNFHAKDGSGYKFLGDIVLQLDKINPQVASRMVSAFSRWRRYDEHRQNLAKAQLEKILSANGLSENVFEIASKSLAA 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2520213 2528554 + CcPI632755_01g002630.1 Cco01g0263 169125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0263 997 FunFam Aminopeptidase N 378 556 - -
Cco01g0263 997 Pfam Peptidase family M1 domain 325 549 IPR014782 GO:0008237(InterPro)|GO:0008270(InterPro)
Cco01g0263 997 CDD M1_APN 106 554 - -
Cco01g0263 997 Gene3D - 557 670 IPR038438 -
Cco01g0263 997 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 302 563 - -
Cco01g0263 997 Gene3D tricorn interacting facor f3 domain 109 292 IPR042097 -
Cco01g0263 997 FunFam Aminopeptidase N 109 292 - -
Cco01g0263 997 Gene3D Neutral Protease Domain 2 378 556 IPR027268 -
Cco01g0263 997 FunFam Puromycin-sensitive aminopeptidase 672 996 - -
Cco01g0263 997 Pfam Peptidase M1 N-terminal domain 127 284 IPR045357 -
Cco01g0263 997 Gene3D - 294 377 - -
Cco01g0263 997 Pfam Domain of unknown function (DUF3458) Ig-like fold 557 671 IPR035414 -
Cco01g0263 997 FunFam Putative aminopeptidase N 294 377 - -
Cco01g0263 997 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 101 290 IPR042097 -
Cco01g0263 997 Gene3D - 673 996 IPR037144 -
Cco01g0263 997 Pfam Domain of unknown function (DUF3458_C) ARM repeats 675 996 IPR024601 -
Cco01g0263 997 PANTHER PUROMYCIN-SENSITIVE AMINOPEPTIDASE 94 997 IPR012779 GO:0008270(InterPro)|GO:0009507(PANTHER)
Cco01g0263 997 PRINTS Membrane alanyl dipeptidase (M1) family signature 274 289 IPR001930 GO:0006508(InterPro)
Cco01g0263 997 PRINTS Membrane alanyl dipeptidase (M1) family signature 411 423 IPR001930 GO:0006508(InterPro)
Cco01g0263 997 PRINTS Membrane alanyl dipeptidase (M1) family signature 356 366 IPR001930 GO:0006508(InterPro)
Cco01g0263 997 PRINTS Membrane alanyl dipeptidase (M1) family signature 392 407 IPR001930 GO:0006508(InterPro)
Cco01g0263 997 FunFam Aminopeptidase N 557 671 - -
Cco01g0263 997 NCBIfam aminopeptidase N 106 995 IPR012779 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0263 K01256 - - csv:101216008 1771.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0263 Cco-Chr1:2520213 Cco07g1462 Cco-Chr7:28740997 1.60E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g302 . . . . . . Bma07g01666 . . . Cma02g01441 . Car02g01208 . . . Cpe05g00346 . . . . . . . . . . . . . . Cone8ag0292 Cone12ag0298 . . . Csa05g00269 Chy09g01240 . . . . Bda09g00031 . . . . . Cmo02g01477 Cmo15g01300 . . . . . Cpe13g00149 Bhi12g00279 . . Lac11g2075 Hepe06g1533 . Lcy12g1636 Cla01g00252 Cam01g0258 Cec01g0250 Cco01g0263 Clacu01g0256 Cmu01g0245 Cre09g2264 Lsi09g00243 . . Cme09g01774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42