Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco01g0265 | ATGGATGGTATGGTGGTGGCCGTGGTAGCTGCGGCGGTGGTGACGTACATGATTTGGTTTTTGAATATCAAACGGTCATTGAGTGGTCCACGTATCTGGCCATTATTGGGCAGTCTTCCAGGTTTGATTGAGAATAGTCATCGTATGCATGATTGGATTGCAGAGAATTTGCGGTCAACGGGTGGCACGTACCAGACTTGTACGTGTGCCATTCCCTTTCTGACAAAAAAGCAAGGTTTGGTGACGGTCACATGCGACCCGAAGAACTTGGAGCATATTTTGAAGACACAATTCGAGAATTACCCAAAAGGGCCTAATTGGCAGGATGCGTTTCATGATTTGCTTGGTGATGGAATCTTCAATTCTGATGGTAATACATGGTTGTTCCAGCGTAAGACTGCTGCACTGGAATTTACTACTAGGACCCTTCGCCAAGCCATGGCTCGTTGGGTTAGTCAAGCTATTAAGTCTCGCTTTTGCCCAATTCTTGAGTCAGCTCAATGTCAGGCCAACTCAGTTGATCTCCAAGACCTTCTACTTCGACTCACATTCGATAATATTTGTGGGTTGACTTTTGGCAAGGATCCGCAGACTCTCGCTCCTGAATTGCCCCACAACAGCTTTGCTATGGCTTTTGATCGAGCCACGGAAGCCACACTGTGTCGCTTTATTTTGCCTAGCTTTATATGGAAGCTAAAGAGATGGCTTCGGCTCGGGATGGAGGTGACCTTAACCCAAAGCCTCCACCATACAAATCAACACCTAACCAATATCATCGAGACACGTAAGCTCGAGTTGTCCAGTCACCACCAGGTCAACAGTAGCCAAACCCCTCACGACGACTTGCTATCCAGATTCATGAAAAAGAAGGAATCCTATTCAAACACATTCCTCCAACACGTGGCACTCAACTTCATCCTAGCTGGCCGAGACACATCATCAGTCGCCCTCAGCTGGTTCTTCTGGCTAGTCATCAAAAACCCAAGAGTAGAGGAAAAAATCCTCACAGAAATCTGCACTGTCCTGTTGGAGACACGTGGCAAAGAGATATCCACGTGGACGGAAGAGCCATTGGAATTTGAAGAAGTGGATCGATTAATTTATCTCAAAGCCGCCATATCCGAAACTCTCCGACTCTACCCATCGGTGCCGGAAGATTCAAAACACGTAATAAACGACGACGTTTTACCCACCGGAACTTTCGTCCCCGCCAGCTCCTCCGTTACATATTCAATATATTCCATTGGTCGAATGAAATTCATTTGGGGAGAAGATTGTTTAGAATTCAAACCAGAGAGATGGTTGGTTACAAATGAAAACAAAATTGAGCTTCAAAATGCTTATAAATTTGTAGCCTTTAATGCCGGCCCCAGAATCTGTTTAGGAAAAGAATTGGCTTATTTACAAATGAAGTCGATTGCGGCCGCGGTCTTGCTCCGCCATCGCCTGACTTTAGTCGCCGGCCACCGTGTTGAGCAAAAGATGTCCTTGACGTTGTTCATGAAGTATGGTCTCAAAGTTCACTTGCATCCCAGAGATTTGGGGTTAGTGGTGGAGAAAATTAGCAAGAACACGGCGGAGACGGCGGCTGTGGCGGCGGATTGA | 1605 | 46.48 | MDGMVVAVVAAAVVTYMIWFLNIKRSLSGPRIWPLLGSLPGLIENSHRMHDWIAENLRSTGGTYQTCTCAIPFLTKKQGLVTVTCDPKNLEHILKTQFENYPKGPNWQDAFHDLLGDGIFNSDGNTWLFQRKTAALEFTTRTLRQAMARWVSQAIKSRFCPILESAQCQANSVDLQDLLLRLTFDNICGLTFGKDPQTLAPELPHNSFAMAFDRATEATLCRFILPSFIWKLKRWLRLGMEVTLTQSLHHTNQHLTNIIETRKLELSSHHQVNSSQTPHDDLLSRFMKKKESYSNTFLQHVALNFILAGRDTSSVALSWFFWLVIKNPRVEEKILTEICTVLLETRGKEISTWTEEPLEFEEVDRLIYLKAAISETLRLYPSVPEDSKHVINDDVLPTGTFVPASSSVTYSIYSIGRMKFIWGEDCLEFKPERWLVTNENKIELQNAYKFVAFNAGPRICLGKELAYLQMKSIAAAVLLRHRLTLVAGHRVEQKMSLTLFMKYGLKVHLHPRDLGLVVEKISKNTAETAAVAAD | 534 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 2538020 | 2539624 | + | CcPI632755_01g002650.1 | Cco01g0265 | 169127 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco01g0265 | 534 | Gene3D | Cytochrome P450 | 22 | 514 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g0265 | 534 | PRINTS | P450 superfamily signature | 460 | 471 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g0265 | 534 | PRINTS | P450 superfamily signature | 371 | 382 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g0265 | 534 | PRINTS | P450 superfamily signature | 308 | 325 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g0265 | 534 | PRINTS | P450 superfamily signature | 451 | 460 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g0265 | 534 | CDD | CYP86A | 67 | 505 | - | - | |
| Cco01g0265 | 534 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 453 | 462 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco01g0265 | 534 | FunFam | Cytochrome P450 | 21 | 515 | - | - | |
| Cco01g0265 | 534 | Pfam | Cytochrome P450 | 28 | 498 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g0265 | 534 | SUPERFAMILY | Cytochrome P450 | 20 | 512 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g0265 | 534 | PANTHER | CYTOCHROME P450 | 18 | 505 | - | - | |
| Cco01g0265 | 534 | PRINTS | E-class P450 group I signature | 450 | 460 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g0265 | 534 | PRINTS | E-class P450 group I signature | 460 | 483 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g0265 | 534 | PRINTS | E-class P450 group I signature | 297 | 314 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g0265 | 534 | PRINTS | E-class P450 group I signature | 370 | 388 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco01g0265 | 534 | PRINTS | E-class P450 group I signature | 317 | 343 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g0265 | Cco-Chr1:2538020 | Cco03g0091 | Cco-Chr3:931086 | 5.20E-193 | dispersed | |
| Cco01g0265 | Cco-Chr1:2538020 | Cco06g0370 | Cco-Chr6:4134889 | 6.50E-228 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco01g0265 | K15398 | - | csv:101216733 | 950.658 |