Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0265 ATGGATGGTATGGTGGTGGCCGTGGTAGCTGCGGCGGTGGTGACGTACATGATTTGGTTTTTGAATATCAAACGGTCATTGAGTGGTCCACGTATCTGGCCATTATTGGGCAGTCTTCCAGGTTTGATTGAGAATAGTCATCGTATGCATGATTGGATTGCAGAGAATTTGCGGTCAACGGGTGGCACGTACCAGACTTGTACGTGTGCCATTCCCTTTCTGACAAAAAAGCAAGGTTTGGTGACGGTCACATGCGACCCGAAGAACTTGGAGCATATTTTGAAGACACAATTCGAGAATTACCCAAAAGGGCCTAATTGGCAGGATGCGTTTCATGATTTGCTTGGTGATGGAATCTTCAATTCTGATGGTAATACATGGTTGTTCCAGCGTAAGACTGCTGCACTGGAATTTACTACTAGGACCCTTCGCCAAGCCATGGCTCGTTGGGTTAGTCAAGCTATTAAGTCTCGCTTTTGCCCAATTCTTGAGTCAGCTCAATGTCAGGCCAACTCAGTTGATCTCCAAGACCTTCTACTTCGACTCACATTCGATAATATTTGTGGGTTGACTTTTGGCAAGGATCCGCAGACTCTCGCTCCTGAATTGCCCCACAACAGCTTTGCTATGGCTTTTGATCGAGCCACGGAAGCCACACTGTGTCGCTTTATTTTGCCTAGCTTTATATGGAAGCTAAAGAGATGGCTTCGGCTCGGGATGGAGGTGACCTTAACCCAAAGCCTCCACCATACAAATCAACACCTAACCAATATCATCGAGACACGTAAGCTCGAGTTGTCCAGTCACCACCAGGTCAACAGTAGCCAAACCCCTCACGACGACTTGCTATCCAGATTCATGAAAAAGAAGGAATCCTATTCAAACACATTCCTCCAACACGTGGCACTCAACTTCATCCTAGCTGGCCGAGACACATCATCAGTCGCCCTCAGCTGGTTCTTCTGGCTAGTCATCAAAAACCCAAGAGTAGAGGAAAAAATCCTCACAGAAATCTGCACTGTCCTGTTGGAGACACGTGGCAAAGAGATATCCACGTGGACGGAAGAGCCATTGGAATTTGAAGAAGTGGATCGATTAATTTATCTCAAAGCCGCCATATCCGAAACTCTCCGACTCTACCCATCGGTGCCGGAAGATTCAAAACACGTAATAAACGACGACGTTTTACCCACCGGAACTTTCGTCCCCGCCAGCTCCTCCGTTACATATTCAATATATTCCATTGGTCGAATGAAATTCATTTGGGGAGAAGATTGTTTAGAATTCAAACCAGAGAGATGGTTGGTTACAAATGAAAACAAAATTGAGCTTCAAAATGCTTATAAATTTGTAGCCTTTAATGCCGGCCCCAGAATCTGTTTAGGAAAAGAATTGGCTTATTTACAAATGAAGTCGATTGCGGCCGCGGTCTTGCTCCGCCATCGCCTGACTTTAGTCGCCGGCCACCGTGTTGAGCAAAAGATGTCCTTGACGTTGTTCATGAAGTATGGTCTCAAAGTTCACTTGCATCCCAGAGATTTGGGGTTAGTGGTGGAGAAAATTAGCAAGAACACGGCGGAGACGGCGGCTGTGGCGGCGGATTGA 1605 46.48 MDGMVVAVVAAAVVTYMIWFLNIKRSLSGPRIWPLLGSLPGLIENSHRMHDWIAENLRSTGGTYQTCTCAIPFLTKKQGLVTVTCDPKNLEHILKTQFENYPKGPNWQDAFHDLLGDGIFNSDGNTWLFQRKTAALEFTTRTLRQAMARWVSQAIKSRFCPILESAQCQANSVDLQDLLLRLTFDNICGLTFGKDPQTLAPELPHNSFAMAFDRATEATLCRFILPSFIWKLKRWLRLGMEVTLTQSLHHTNQHLTNIIETRKLELSSHHQVNSSQTPHDDLLSRFMKKKESYSNTFLQHVALNFILAGRDTSSVALSWFFWLVIKNPRVEEKILTEICTVLLETRGKEISTWTEEPLEFEEVDRLIYLKAAISETLRLYPSVPEDSKHVINDDVLPTGTFVPASSSVTYSIYSIGRMKFIWGEDCLEFKPERWLVTNENKIELQNAYKFVAFNAGPRICLGKELAYLQMKSIAAAVLLRHRLTLVAGHRVEQKMSLTLFMKYGLKVHLHPRDLGLVVEKISKNTAETAAVAAD 534
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 2538020 2539624 + CcPI632755_01g002650.1 Cco01g0265 169127
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0265 534 Gene3D Cytochrome P450 22 514 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0265 534 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0265 534 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0265 534 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0265 534 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0265 534 CDD CYP86A 67 505 - -
Cco01g0265 534 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco01g0265 534 FunFam Cytochrome P450 21 515 - -
Cco01g0265 534 Pfam Cytochrome P450 28 498 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0265 534 SUPERFAMILY Cytochrome P450 20 512 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0265 534 PANTHER CYTOCHROME P450 18 505 - -
Cco01g0265 534 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0265 534 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0265 534 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0265 534 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0265 534 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0265 Cco-Chr1:2538020 Cco03g0091 Cco-Chr3:931086 5.20E-193 dispersed
Cco01g0265 Cco-Chr1:2538020 Cco06g0370 Cco-Chr6:4134889 6.50E-228 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0265 K15398 - csv:101216733 950.658