Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0267 ATGGCTTCAACTTTCACTTTCCGTCCATTTCCTCTCATTCTCTCTCCTCGCCCCAATTTTCCTTCTCTAAGACCTCAATTTCACCGCCAATATCTTCCCACCATTCGAATTCTTCGACCTTCAGTTCCTTCCGCCATCGGTCCGGACGGCAAATTCTATCCGGACCCGGCCGACGACGACCCGCCGGAAGCTCCGGAAGATTCTGGCCATGGAGTTTCAAAGTTTCAGCAGATATACCGCCAGGCGGCTCGTGCGAGGAAGCTTCAGGAGGAGGATTTCAAGAAGCATCAGTCTACATATCTTTCGGCCATTGCTGACGTTGAGGATGCTCCTGAGAATGCAGAGTATTTGAATTCGGAGAGCTCAGGCGATGATTTGTTCGGTGAAATTGACAAAGCTATTGCTCTGAAGCGGAAGGAGTTCGTGAAGCAGGGACTTCTTAAGCCTAACCCGAAGAAAGAAAAGGCGATTGAGAAAGATGATCTTGAGGGCATTGATGAGTTGGAGACTGAGGAGGTCGCGGACTTGGAGGAGATTAACGAACTTCGGGGGCTTACAGTGATTTCGGAGGACGAGGACGAGGATGAAGATGGGCCTAGGAATTTGGATGACAATGTAAGTGAATTAGGTGGTCAGGATGAACTATCTTCTTTTAATTCTTTTGATGTGGATTTTGATAGCTATGGAAAAGTTAAGGCTAGGATTGTGGAACCCAAGTTCAAAATGACTTTAGCGGAGCTCTTGGATGAAAGTAAGGTCGTTCCAGTTTCTGTTTTTGGCAATTTAGAAATAGAAATTACTGGCATTCAACATGATTCGAGGATGGTTAGCGCGGGTGACTTGTTTGTGTGCTGTGTTGGGAGGGAAACTGATGGACACTTGTATTTAACTGAGGCGGATAAGAGGGGTGCAGTGGCTGTGGTGGCTAGCAAGGAGATAGACATAGAAGAAACTTTGGGCTGTAAAGCTTTGGTAATGGTGGAGGATACTAACTCTGTTCTTCCTGCATTGGCTGCTTCTTTTTACAGGAACCCTTCAAAGAATATGGCCGTGATAGGAATAACTGGGACAGACGGTAAAACGAGCACTTCCTACTTGATAAAGGGGATGTATGAGGCAATGGGGTTGAGAACTGGGTTGTTAGGTACAGTGGCCTATTATTTACATGGGGACAATAAGTTGGAGTCGCCAAGTACGACCCCGGATGCTATTTTGGTCCAAAACTTAATGGCAAAGATGCTTCATAATGGAACTGAAGCGGTTGTCATGGAGGTTTCATCCGATGGACTTGCTCGTGGCAGGTGTGATGAAGTTGATTTTGATATAGCGGTTTTCACAAATTTGACTAGAGACCATTTGGATTTTGAAGGGTCTGAAGAGGAGTATAGGGATGCAAAAGCCAAGCTATTTAAAAGGATGGTGGATCCAGACCGACACCGAAAAGTTATTAACATCGATGATCCCAGTGCACCATTCTTCATAGATCAAGGAAACCCAGATGTGCCTGTTGTCACCTTTGCAATGGAAAACAAAAATGCTGATGTCCACCCCCTGAAATATGAATTGTCATTATTTGAGACACAGGTTTTGGTTCACACTCCCCAGGGTATATTAGAGATATCGTCGGGGTTGCTTGGAAAGCACAATATATACAATATTCTTGCAGCAGTGGCAGTTGGGATCGCAGTTGGAGCACCATTAGAGGATATTGTTAGAGGTGTTGAAGAGGTTGATGCTGTTCCTGGGAGATTCGAGCTGATTGATGAGGAGCAGGCATTTGGTGTAATTGTTGATCACGCTCATACTCCTGATGGTCTATCCCGGCTGCTCGATTCTGTTAGGGAGCTTGGCCCGAGGCGGATTATCACTGTTTTTGGATGCTGTGGTGAGCATGACAGGGGGAAAAGACCCATGATGACAAAGATTGCAACTGATAAAAGCGATGTTACTATTCTGACATCTGATAATCCAAGGAATGAAGATCCATTGGACATCTTGGATGATATGTTGGCTGGTATAGGCTGGACTATGCAGGATTACTTGAAACATGGAGAAAATGATTACTACCCGCCTCTCTCAAATGGTCATAGAATTTTCCTGCATGATATCAGACGTGTGGCTGTACGTGCTGCTGTTGCAATGGGCGAGGAAGGCGACGTGGTTGTGGTTGCCGGCAAGGGCCATGAAACATATCAAATTGAAGGTGATAAAACAGAGTTTTTTGATGATAGAGAAGAATGCAGAGAAGCACTGCAATATGTTGATGAACTTCACCAAGCTGGAATTGACACAAGTGAATTTCCATGGCGGAACTTTTTCATGACTGAAAGAAGAGTAGAAGTGTTTCTCTGTCATGGTCGGTCACAACGGTTCAGGAACTATAAAATGCACAAGGCAAATACTAGTCATTGTGTTTCTAATTGTGCTCTTTTGCTTGTTTTCTTTTGGTATACAGTTGCTCTGGTCGCCTTGGTTGGATACGCAGCAACGATTGGTGCTGAAGTTGGAGATGGAAGTGAAGAATCCGAATCATTGCTTGTAAATCCCTTCTTGTCTGTGTTAATGGTTCCCGCCGTTCCCAACGGTGGTTCGTACGGAAACCCCGTTTACTCCAAAAGGATCACTAATACTCTTCAAACAGAAGCACAAGCAAAAATTCATACACGACATCAACAGAGGCATTTTCTTGGTGGGTTTGCCATATCCGCTCTAGTTTTGCTGCTGATTTTTCCTTGTCACGTGACTGCTGGGGATATAGTTCACCATGACGATTTGACTCCTAAAAAGCCTGGCTGTGAGAACGACTTCATTCTGGTTAAAGTTCAAACTTGGATTGATGGCAAAGAAGCTAGTGAATTTGTCGGTGTCGGTGCAAGATTTGGTGCTACAATCGTGTCAAAGGAGAAAAATGCAAACCAAACACGCCTTGTTCTTGCAAATCCCCGTGATTGTTGCAGCGTGCCAAAGAACAAGCTTTCTGGAGATATAATCATGGTAGATCGTGGTCACTGCAAATTTACTACAAAAGCAAATATTGCAGAAGCTGCAGGTGCTTCAGCAATACTCATAGTAAATAACCAAAAAGAGCTTTACAAGATGGTTTGTGATCCTGATGAGACTGATCTTGATATACATATACCTGCTGTCATGCTCCCACAAGATGCTGGAACAAGCTTGGAGAAGATGCTTATAAGTAATTCATCAGTGTCTGTTCAGCTCTACTCTCCACTACGACCACCAGTTGACATAGCTGAAGTATTCTTATGGTTAATGGCTGTCGGTACGATCTTGTGCTCATCTTTTTGGTCTGCCTGGAGTGCTAGGGAAGCAGCCATTGAGCAGGACAAGCTGCTAAAGGATGGTGTAGATGATATTCAAAATGCTGAAGACATGGGCAGCCCTGGTGTTGTATATATTAACATGGCATCAGCAGTCTTGTTTGTCGTCGTTGCTTCGTGCTTTTTGATTTTGCTTTACAAACTCATGTCGTACTGGTTCATTGAGCTTTTGGTAGTTCTTTTCTGCATAGGAGGTGCAGAGGGTTTGCAAACTTGTTTGGTTGCGTTATTGTCAAGATGCTTTAAGCAAGTTGGAGAATCATACATCAAAGTGCCATGCTTTGGAGCTGTTTCATACCTCACTGTTGCTGTTTCTCCATTCTGCATAGCATTTGCTGTTGCTTGGGCTGTTTATCGGAATGTGTCATTTGCCTGGATCGGTCAAGACATACTTGGAATTGCACTGATAATTACAGTTCTTCAAATAGTTCGTATACCAAATCTCAAGGTTGGAACAGTGCTACTCAGTTGTGCCTTCCTCTATGATATCTTTTGGGTCTTTGTTTCTAAGAAGTTGTTCAATGAAAGTGTGATGATTGTGGTGGCTCGTGGCGATAAAAGCGGAGAGGACGGAATCCCAATGCTGCTAAAGATCCCTCGCATGTTTGATCCGTGGGGTGGTTATAGCATTATTGGATTTGGTGACATCCTTTTACCTGGACTCGTAGTAGCATTTTCTCTCAGGTATGACTGGTTGGCAAATAAGAGCCTCCGGGTCGGTTACTTCTTACCAGCAATGCTTGCTTATGGGTCAGGTCTTCTGATTACTTATGTGGCTTTGAACCTGATGGATGGCCATGGCCAGCCCGCACTGCTTTACATCGTCCCGTTCACTCTTGGAACCCTTTTGACACTGGGGAAGAAGAGAGGAGATTTGGGGATTCTGTGGACAAAAGGAGAACCAGAAAGGGTCTGCCCTCATGCTCATCTTCTCATCAATGATGATTTAAATGAAGAAAAATGA 4302 44.3 MASTFTFRPFPLILSPRPNFPSLRPQFHRQYLPTIRILRPSVPSAIGPDGKFYPDPADDDPPEAPEDSGHGVSKFQQIYRQAARARKLQEEDFKKHQSTYLSAIADVEDAPENAEYLNSESSGDDLFGEIDKAIALKRKEFVKQGLLKPNPKKEKAIEKDDLEGIDELETEEVADLEEINELRGLTVISEDEDEDEDGPRNLDDNVSELGGQDELSSFNSFDVDFDSYGKVKARIVEPKFKMTLAELLDESKVVPVSVFGNLEIEITGIQHDSRMVSAGDLFVCCVGRETDGHLYLTEADKRGAVAVVASKEIDIEETLGCKALVMVEDTNSVLPALAASFYRNPSKNMAVIGITGTDGKTSTSYLIKGMYEAMGLRTGLLGTVAYYLHGDNKLESPSTTPDAILVQNLMAKMLHNGTEAVVMEVSSDGLARGRCDEVDFDIAVFTNLTRDHLDFEGSEEEYRDAKAKLFKRMVDPDRHRKVINIDDPSAPFFIDQGNPDVPVVTFAMENKNADVHPLKYELSLFETQVLVHTPQGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRFELIDEEQAFGVIVDHAHTPDGLSRLLDSVRELGPRRIITVFGCCGEHDRGKRPMMTKIATDKSDVTILTSDNPRNEDPLDILDDMLAGIGWTMQDYLKHGENDYYPPLSNGHRIFLHDIRRVAVRAAVAMGEEGDVVVVAGKGHETYQIEGDKTEFFDDREECREALQYVDELHQAGIDTSEFPWRNFFMTERRVEVFLCHGRSQRFRNYKMHKANTSHCVSNCALLLVFFWYTVALVALVGYAATIGAEVGDGSEESESLLVNPFLSVLMVPAVPNGGSYGNPVYSKRITNTLQTEAQAKIHTRHQQRHFLGGFAISALVLLLIFPCHVTAGDIVHHDDLTPKKPGCENDFILVKVQTWIDGKEASEFVGVGARFGATIVSKEKNANQTRLVLANPRDCCSVPKNKLSGDIIMVDRGHCKFTTKANIAEAAGASAILIVNNQKELYKMVCDPDETDLDIHIPAVMLPQDAGTSLEKMLISNSSVSVQLYSPLRPPVDIAEVFLWLMAVGTILCSSFWSAWSAREAAIEQDKLLKDGVDDIQNAEDMGSPGVVYINMASAVLFVVVASCFLILLYKLMSYWFIELLVVLFCIGGAEGLQTCLVALLSRCFKQVGESYIKVPCFGAVSYLTVAVSPFCIAFAVAWAVYRNVSFAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKKLFNESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLVVAFSLRYDWLANKSLRVGYFLPAMLAYGSGLLITYVALNLMDGHGQPALLYIVPFTLGTLLTLGKKRGDLGILWTKGEPERVCPHAHLLINDDLNEEK 1433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2552844 2565337 - CcPI632755_01g002670.1 Cco01g0267 169129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0267 1433 PANTHER MUR LIGASE FAMILY MEMBER 229 758 - -
Cco01g0267 1433 CDD PA_GO-like 935 1073 - -
Cco01g0267 1433 Gene3D - 243 343 - -
Cco01g0267 1433 Pfam PA domain 975 1059 IPR003137 -
Cco01g0267 1433 Pfam Mur ligase family, catalytic domain 265 342 IPR000713 GO:0009058(InterPro)|GO:0016881(InterPro)
Cco01g0267 1433 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 242 751 IPR005761 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008360(InterPro)|GO:0016881(InterPro)|GO:0051301(InterPro)
Cco01g0267 1433 FunFam Signal peptide peptidase-like 3 938 1077 - -
Cco01g0267 1433 Pfam Signal peptide peptidase 1136 1413 IPR007369 GO:0016020(InterPro)|GO:0042500(InterPro)
Cco01g0267 1433 SMART psh_8 1135 1402 IPR006639 GO:0016020(InterPro)|GO:0042500(InterPro)
Cco01g0267 1433 Gene3D - 345 583 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Cco01g0267 1433 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 585 758 - -
Cco01g0267 1433 MobiDBLite consensus disorder prediction 53 67 - -
Cco01g0267 1433 SUPERFAMILY PA domain 982 1031 IPR046450 -
Cco01g0267 1433 Gene3D - 585 762 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Cco01g0267 1433 MobiDBLite consensus disorder prediction 47 72 - -
Cco01g0267 1433 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 580 752 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Cco01g0267 1433 Pfam Mur ligase middle domain 354 559 IPR013221 GO:0005524(InterPro)|GO:0009058(InterPro)|GO:0016881(InterPro)
Cco01g0267 1433 SUPERFAMILY MurD-like peptide ligases, catalytic domain 345 577 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Cco01g0267 1433 SUPERFAMILY MurE/MurF N-terminal domain 242 345 IPR035911 -
Cco01g0267 1433 MobiDBLite consensus disorder prediction 184 208 - -
Cco01g0267 1433 Pfam Mur ligase, glutamate ligase domain 582 727 IPR004101 GO:0009058(InterPro)|GO:0016881(InterPro)
Cco01g0267 1433 Gene3D - 940 1076 - -
Cco01g0267 1433 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 264 752 IPR005761 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008360(InterPro)|GO:0016881(InterPro)|GO:0051301(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0267 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0267 Cco-Chr1:2552844 Cco08g0482 Cco-Chr8:12239691 1.30E-28 dispersed
Cco08g0484 Cco-Chr8:12257461 Cco01g0267 Cco-Chr1:2552844 2.70E-86 transposed
Cco01g0267 Cco-Chr1:2552844 Cco05g0979 Cco-Chr5:8558627 9.20E-19 wgd
Cco01g0267 Cco-Chr1:2552844 Cco06g0372 Cco-Chr6:4156228 1.00E-227 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g313 . . . . . . . Bma14g00701 . . Cma02g01444 . Car02g01212 . . . Cpe05g00342 . . . . . . . . . . . . . . Cone8ag0299 Cone12ag0305 . . . Csa05g00273 Chy09g01235 . Blo03g00340 . Bda07g00481 . . . . . . Cmo02g01481 . . . . . . . Bhi12g00272 . . . Hepe06g1538 . Lcy12g1641 Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Lsi09g00249 . . Cme09g01769
Vvi16g705 . . Bda05g00079 . Bpe03g00282 . Bma10g01228 . . Cmo18g01275 . . . . . . Cpe14g00104 Bhi01g01307 Tan01g0241 . . Hepe07g0148 . . Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Cone1ag1162 Cone5ag0872 . . . . . Cme06g01009 Blo07g00402 . . . . . . . . . . . Cma18g01252 Car16g00109 Car18g01159 Cpe09g00085 . . . . . . . . Cla05g00889 Cam05g0976 Cec05g0980 Cco05g0979 Clacu05g0963 Cmu05g0920 Cre05g1005 . Csa03g01721 Chy06g00953 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37