Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0272 ATGGCGACAGAAGCACCTTCGCAAACTCCATCCGAGGATTTACAGTCCCTCTCAATCTCAGACGATAAAGTTCAGGAGCCGGCTTGTTCATCGAACTCTTCAAACCAATTGAGCTTGGAGGAGAAGTATCAAATTGTTAGAAGTGTTGGGGAAGAGTGTATCCAAGAAGACGAGCTGCGGAACCTGCTTGATAAAAAGCCGGAACCAGTGTGCTATGATGGGTTCGAACCATCTGGGAGAATGCATATTGCTCAGGGAGTGATGAAGGCAATAAATGTCAACAAGCTTACTTCTGCCGGGTGCAGAGTGAAAATATGGATTGCTGATTGGTTTGCTCAGCTTAACAACAAAATGGGGGGTGATCTGAAGAAAATTGAGACTGTTGGCCGCTACTTAATTGAGATATGGAAAGCAGTTGGGATGGATCTGGAAGGAGGTAAGGTTGAATTTTTGTGGTCGTCGAAGGAGATTAACTCTAGGGCAGCAGAATACTGGCCCCTTGTAATGGATATCGCTCGGAGAAACAAGCTTCCAAGGATAATTAGATGTAGCCAAATTATGGGAAGAAGTGAACAGGATGAGTTGACTGCTGCCCAAATTCTCTACCCATGCATGCAATGTGCTGACATTTTTTTCCTGAAGGCTGACATATGTCAACTGGGGATGGATCAACGGAAAGTAAATGTACTTGCAAGAGAGTATTGTGATGACATCAAGAGGAAAAACAAGCCTATCATCCTATCCCACCACATGTTGCCAGGCTTACAGCAGGGGCAGGAGAAGATGTCTAAAAGTGATCCATCATCCTCTATATTTATGGAAGACGATGAGGCGGAAGTGAATTTAAAGATAAAGAAAGCATATTGCCCTCCATTGATTGTGGAAGGGAATCCATGCTTAGAGTACATAAAGTATCTCATTTTCCCTTGGTTCAAGGAGTTCACTGTGGAACGAAATGCAGATCATGGTGGAAATAAGACCTTCACAACCTTCGAAGAACTGGTTGCTGACTACGCAACAGGAGTACTGCATCCAGGTGATCTCAAACCAGCGTTGTCTAAGGCTTTGAATAAGATATTGGAGCCTGTACGAGAGCACTTCAAAAATGATAGCAATGCCAAAGATTTATTGAAGAGGGTCAAGGCTTACCGAGTCACTAGGTGA 1164 43.9 MATEAPSQTPSEDLQSLSISDDKVQEPACSSNSSNQLSLEEKYQIVRSVGEECIQEDELRNLLDKKPEPVCYDGFEPSGRMHIAQGVMKAINVNKLTSAGCRVKIWIADWFAQLNNKMGGDLKKIETVGRYLIEIWKAVGMDLEGGKVEFLWSSKEINSRAAEYWPLVMDIARRNKLPRIIRCSQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSSIFMEDDEAEVNLKIKKAYCPPLIVEGNPCLEYIKYLIFPWFKEFTVERNADHGGNKTFTTFEELVADYATGVLHPGDLKPALSKALNKILEPVREHFKNDSNAKDLLKRVKAYRVTR 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2591683 2595517 - CcPI632755_01g002720.1 Cco01g0272 169134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0272 387 PIRSF TyrRS_arch_euk 36 386 IPR023617 GO:0004831(InterPro)
Cco01g0272 387 Gene3D HUPs 199 387 IPR014729 -
Cco01g0272 387 PANTHER TYROSINE-TRNA LIGASE 31 383 IPR050489 GO:0004831(PANTHER)|GO:0005737(PANTHER)|GO:0006437(PANTHER)
Cco01g0272 387 FunFam Tyrosine--tRNA ligase 1 cytoplasmic 33 195 - -
Cco01g0272 387 Gene3D HUPs 30 198 IPR014729 -
Cco01g0272 387 Pfam tRNA synthetases class I (W and Y) 68 361 IPR002305 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cco01g0272 387 SUPERFAMILY Nucleotidylyl transferase 43 372 - -
Cco01g0272 387 MobiDBLite consensus disorder prediction 1 35 - -
Cco01g0272 387 FunFam tyrosine--tRNA ligase 1, cytoplasmic 196 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0272 K01866 - - csv:101218148 766.918
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g319 . . . . . . . . . . . Cma15g01230 . Car15g01108 . . . . . . . . . . . . . . . . . . . Cone6ag0780 Cone9ag0785 . Csa05g00278 Chy09g01231 . Blo03g00338 . . . . . . . . . Cmo15g01294 . . . . . Cpe13g00154 Bhi12g00268 . . . . . Lcy12g1647 Cla01g00259 Cam01g0266 Cec01g0257 Cco01g0272 Clacu01g0265 Cmu01g0254 Cre09g2255 Lsi09g00254 . . Cme09g01766
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008780 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34