Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0273 ATGGTTGGTACAGTTTCTGAACCATTGCTACCTTTTGAGGATGCGTGTCGATCTGTTTTAGCTTCTTTATTAGCTGATATACGGTTGGCCTTAGCTGAAATTTGGGTGGTAATGTTTCCTCAGCTTCTCATCAGCATTTCGCAGTTGTCTTTAACATTAGCCAAACTGAAATTGGAGCTGGTGGAGTGGTTAAATTTTCTGCTCCCCGATATAAATTTGCCACTGGATGCTTCAGATGAGGAATTGAGAGCATGCTTGATTGATGGAACTGTACTATGCAGCATGTTGGATAAACTATGCCCTGGCGCAGTTCAGGGAGGCAATTCTAAGCCCATCGTTCCTAATATTGAGAGTTTTCTAATAACTCTGGATGAATTAGCACTTCCTGGATTTGAACCTTCTGCCTTAGAGCAGGGATCTATTGCACCGGTTTTGCACTGCTTGAGCACACTTCGAGCTTCTTTTGATTTGAGTGTTGGGGATGAGTACACTCAAAATTGTTCACGAAAAAAATGGAACTTATATGTAGACTCATTAGATGGAATCAATAATTTATCTGGGCAAAGATTTCAAGATTTTCAGAATGGTTCGGTTGTATCAGTGCCATCAAATGGTTTAAACAGTCATATTCAATACGAGGATCATGAAGGGCAAGAACAAAATCTTGATGTTTCTGGTTCTAACATCTTGGAGTTGATAAAATCAAAGAATCTTGAGAATGTCTCTACTCAATCACTTTTCAATATGATCAATCGAATTCTGGATGGCAGTGTTGAGACAAAAAATGGAGATGTGTCACATCAAGTAGCTTATATTCTGAGAAAAGTTGTACAAGTGCTTGAGCAGAGGATTTTAACTCATGCTGGAAACCTGAGACATCAAAGCAATCTTTTGAAAGCTCGGGAGGAGAAATTTCTCTCAAAATTAAGAGTCCTTGAAACCCTTGCAACAGGGACCACGGAAGAAAATGAGGTTGTCATGAACCAGCTTCAGCGTTTGAAGATTGAAATGTTCAAAGTAGAGGAGATGAAAAACTGTGGGGAGCAGGATAAGATGGCGTTGAAGGAGCAAAAGGCACTCTGTGATGTCGAGCTTTCAAATCTTAAAGATGAGCTAGACAAAGTTAAAAGGGAACATGAAAATCATTGCTTACAACTGGAAACAAATGCTAAGGAGGAGAAAGCTAAGTTTGAGGAAAAACTAAATGAACTTGAATACTTATTAGCTGATTCCAGGAAGAATGTGAAGGAACTTGAGACATTTTCTGAATCTAAATCACTGAGATGGAAAAAGAAAGAGTTCGTCTATCAAAATTTTGTTGATGATCTGCTTCGAGCTTTTCAGGAATTAAGGATTTCAGTGGAGTCCATCAAACGTGAGGTCTTGAATACAAAAGGAAACTATGCTGAGGATTTTAATTTCCTTGGATCGAAGTTCAAAGGATTAGCAGACGTGGCTCAGAATTACCATGCAGTTCTGAATGAAAATAGAAGATTGTATAATGAAGTTCAGGATTTAAAAGGCAACATTCGAGTGTATTGTCGGATACGGCCATTCCTTCCAGGACAAAGCAAGAAGCTAACTACAGTTGAGTATATTGGTGAAAATGGTGAATTGGTGATTATAAATCCCGCTAAACAAGGAAAAGACAATCGTAGACTATTCAAATTCAATAAAGTTTTTGGTCCGACATGTTCACAAGAGGATGTGTTTTTAGACACTCAACCATTAATTCGATCTGTCCTCGATGGATATAATGTTTGCATATTTGCTTATGGACAAACTGGTTCGGGAAAGACCTATACTATGAGTGGACCTGATGTATCATTGAGAGCAGAATGGGGTGTTAACTATCGAGCATTAAATGACCTCTTTGAAATTTCTCAAAGCAGGAAGGGCTCTATTTCCTATGAAATTGGTGTCCAAATGGTTGAGATATACAATGAGCAAGTCCGTGATCTGCTCTCAACTAGCGTACCTGATGCCGGTATGCATCCTGTTAGATCTACTAGCGATGTCCTGGATTTGATGAAGATTGGATTGACAAACAGGGCAGTTGGAGCCACTGCCTTGAATGAAAGAAGCAGCAGATCTCATAGTGTGCTGACAATTCATGTTCGTGGTGTGGACTTGGAGACAGATGCTATCTTACGTGGTAGTCTTCATTTAATAGATCTTGCCGGTAGTGAAAGGGTGGACCGTTCAGAGGCGACTGGAGATAGGCTGAAGGAGGCACAACACATTAACAAATCATTGTCAGCACTTGGGGATGTAATTTTTGCTCTTGCACAGAAGAATTCGCACATACCTTACAGAAATAGCAAACTAACCCAAGTCCTCCAAAGTTCTTTAGGTGGTCAAGCAAAGACGCTGATGTTTGTACAGATTAATCCCGATGTAGAGTCGTACTCTGAAACAATAAGCACCCTGAAGTTTGCAGAAAGAGTTTCTGGTGTAGAGTTGGGTGCTGCCCGCAGCAATAAAGAGGGTAGATATGTTAGAGAACTCATGGATCAGGTGGCCGTTCTCAAGGATACCATTGCAAATAAAGACGAGGAGATTGAGCGGTTGCAGTTGCTTAAAACTAATGGCAATGGTGTAAAGCATGGCGCTGGTTCCCTAAGATATGAGTCATTTTCTCCTAGAAGATACTCTAGCACAACTCCTCGGCAGAGCCAAAAGCCATCAGGGAGAAAAGGGTTAGGGTTGGCGAATAAAGCAGCATCTGACATGGACAATTTCTCAGATTATGACAGGCGTTCTGAAGCTGGATCACTTCAGTCTATGGATGACTTTAGACATCATAAGCGTTCTGGATCTGGATCACATTTGTTTATAGAAGACTTTAGACATAAGCGTTCTGGATCTGGATCACATCTGTCTGTAGAGGACTTTAAACATCAGAAGGAATCTTCTTCACAGTCAAGGGCTTTAAGTCAGAATGTTACTGATGATGTTGACCTTTTAGGCTTTGGAAATGCTGATTCTGACGAGAGATTAAGTGACATATCAGATGGTGGGCTTTCGATGGGAACTGAAACCGATGGATCAATTTGCAGTGTTGTGGAATATACTCTATTCCCTGAAGTTCTAAAACCATCAGATGTTCCGTTTGCCGATACCAAATACCCGGAGAGCACATTGGATGTAAACAGGCCAGCAGAGACTGCAACAACTGGGGGGAAGTCATTGGTTCCTATTCCAGAAAAAACCAATGTATCATTGAAGTCAGGCCCCAGGCCCCCCCAAAAGCCCGTGCAAGAAAAACCGTCAAGAGTTTCATTGACGAAAAGCTCCTCAAAGGCTCCATCAGCATCAAATACCAAACTTTTCATTGATAAAATGAAAAGTGCCAAAAAAACGATTGTTGGTAGCTCCTCGTCAATGAAAAGCCGCAAAAGTTCTTGGTTGCAGTTTAACTTCACACTTCTAGTTTCTGGTTCATCCCATAGGTTGCCTTTTGCCATTCTAATTGGAATCTCATAA 3486 40.73 MVGTVSEPLLPFEDACRSVLASLLADIRLALAEIWVVMFPQLLISISQLSLTLAKLKLELVEWLNFLLPDINLPLDASDEELRACLIDGTVLCSMLDKLCPGAVQGGNSKPIVPNIESFLITLDELALPGFEPSALEQGSIAPVLHCLSTLRASFDLSVGDEYTQNCSRKKWNLYVDSLDGINNLSGQRFQDFQNGSVVSVPSNGLNSHIQYEDHEGQEQNLDVSGSNILELIKSKNLENVSTQSLFNMINRILDGSVETKNGDVSHQVAYILRKVVQVLEQRILTHAGNLRHQSNLLKAREEKFLSKLRVLETLATGTTEENEVVMNQLQRLKIEMFKVEEMKNCGEQDKMALKEQKALCDVELSNLKDELDKVKREHENHCLQLETNAKEEKAKFEEKLNELEYLLADSRKNVKELETFSESKSLRWKKKEFVYQNFVDDLLRAFQELRISVESIKREVLNTKGNYAEDFNFLGSKFKGLADVAQNYHAVLNENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKLTTVEYIGENGELVIINPAKQGKDNRRLFKFNKVFGPTCSQEDVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDVSLRAEWGVNYRALNDLFEISQSRKGSISYEIGVQMVEIYNEQVRDLLSTSVPDAGMHPVRSTSDVLDLMKIGLTNRAVGATALNERSSRSHSVLTIHVRGVDLETDAILRGSLHLIDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKNSHIPYRNSKLTQVLQSSLGGQAKTLMFVQINPDVESYSETISTLKFAERVSGVELGAARSNKEGRYVRELMDQVAVLKDTIANKDEEIERLQLLKTNGNGVKHGAGSLRYESFSPRRYSSTTPRQSQKPSGRKGLGLANKAASDMDNFSDYDRRSEAGSLQSMDDFRHHKRSGSGSHLFIEDFRHKRSGSGSHLSVEDFKHQKESSSQSRALSQNVTDDVDLLGFGNADSDERLSDISDGGLSMGTETDGSICSVVEYTLFPEVLKPSDVPFADTKYPESTLDVNRPAETATTGGKSLVPIPEKTNVSLKSGPRPPQKPVQEKPSRVSLTKSSSKAPSASNTKLFIDKMKSAKKTIVGSSSSMKSRKSSWLQFNFTLLVSGSSHRLPFAILIGIS 1161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2597935 2610636 + CcPI632755_01g002730.1 Cco01g0273 169135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0273 1161 Coils Coil 440 460 - -
Cco01g0273 1161 Coils Coil 358 414 - -
Cco01g0273 1161 Coils Coil 833 860 - -
Cco01g0273 1161 ProSiteProfiles Calponin homology (CH) domain profile. 54 156 IPR001715 GO:0005515(InterPro)
Cco01g0273 1161 Coils Coil 489 509 - -
Cco01g0273 1161 MobiDBLite consensus disorder prediction 1089 1106 - -
Cco01g0273 1161 PRINTS Kinesin heavy chain signature 769 790 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco01g0273 1161 PRINTS Kinesin heavy chain signature 720 738 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco01g0273 1161 PRINTS Kinesin heavy chain signature 689 706 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco01g0273 1161 PRINTS Kinesin heavy chain signature 584 605 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco01g0273 1161 FunFam Kinesin-related protein3 660 861 - -
Cco01g0273 1161 SMART kinesin_4 507 827 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco01g0273 1161 MobiDBLite consensus disorder prediction 989 1008 - -
Cco01g0273 1161 MobiDBLite consensus disorder prediction 956 971 - -
Cco01g0273 1161 Gene3D - 51 156 IPR036872 -
Cco01g0273 1161 SUPERFAMILY Calponin-homology domain, CH-domain 55 151 IPR036872 -
Cco01g0273 1161 Gene3D Kinesin motor domain 452 821 IPR036961 -
Cco01g0273 1161 ProSitePatterns Kinesin motor domain signature. 719 730 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cco01g0273 1161 PANTHER KINESIN-LIKE PROTEIN KLP-3 59 1044 IPR027640 GO:0003777(InterPro)|GO:0007017(PANTHER)|GO:0007018(InterPro)|GO:0008017(PANTHER)|GO:0015630(PANTHER)
Cco01g0273 1161 MobiDBLite consensus disorder prediction 1043 1106 - -
Cco01g0273 1161 MobiDBLite consensus disorder prediction 870 918 - -
Cco01g0273 1161 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 451 659 - -
Cco01g0273 1161 MobiDBLite consensus disorder prediction 956 981 - -
Cco01g0273 1161 ProSiteProfiles Kinesin motor domain profile. 509 819 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco01g0273 1161 Pfam Kinesin motor domain 515 817 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco01g0273 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 857 IPR027417 -
Cco01g0273 1161 MobiDBLite consensus disorder prediction 879 895 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0273 K27887 - - csv:101218386 1905.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0273 Cco-Chr1:2597935 Cco10g1647 Cco-Chr10:29889856 6.20E-191 dispersed
Cco01g0273 Cco-Chr1:2597935 Cco03g0512 Cco-Chr3:5263456 9.90E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54