Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0274 ATGAGTTCCTCTGAACCATGTGTCAAGGAAACTCCTGCATTGGGCTTGAATTGTTTGACAGTAACTCAGAAGATGTCTTTGTTAGAACCTTGTAAATATCATTCCACATCATCAGTTTGGAGTCTACTAAATGGTGGTAGTGACATGTCAGCTAAATCCTGGAAAGGAAAAGGCCTTACTAGTGTACGAATCTTGCACGATATGGGTAAGATATATGGATGGATGAACTGTGTAAGTCATAGTGAAGCAGGCTATCCTGTGAAAGTTGCTAATACTGGAAGCATGAAAGCCAATGCATTCAAGGCTAGAGATGGTCTTCATGAAGCAGGGGTCTGCATTTCAGGAGCTTCAAGTTTTCTTGTTCATGAGTTGATTAGTGAAACTTCAAGGAATACTCCTATGTTCCAATCAATTAATGTATCATCTTTTTTCATCCGAAAGTTGGAAATAAAAATGTTAGAAAATGTTTATATGGCCTCTCGTATCCTTATGATTGTTCAAGATAATAAGGCAGATGGCAGTCTAGTAGAGAGCCCAAATCCAGATATTTTGGCAGCTCATTCAGCACCTTCCGTCGATGGTGCATTAGACAATTTAGACTACAGGCAGAAGACTAATAGTAGTAGTGAACAACATGAGAATAAAACCAAAAAGTTGGACAAGCTCATTGTTGAAAATGAGTACAACAGAGAGAATTCCTCATTGACCCGTGAAAAATCTTGTTACACTATTGCTAAGCAAGAACATGCCTTTGCAGGGGCGTTGGCTGGTGTATTTGTCAGTCTTTGTCTACATCCTGTTGATACAATCAAAACGGTGGTTCAGTCTTATCATGCAGAACAGAAGTCTCTCAGTTACATTGGAAAATCAATTGTCTCTGATCGAGGTTTAAGTGGACTTTATCGTGGAATCTCCACCAACATTGCTTCTTCAGCTCCGATATCTGCTGTTTACACTTTCACATATGAATCAGTTAAAGGAGCTTTGCTTCCACTTCTCCAAGAGATTTTTTTGGGGTCTTTACTCTTGCTCTCTCCCTCTCCAAGTAGAAGTTCGGAGTACGCTGAAGAGGAGTATCGCTCTATTGTCCACTGTATGGCTGGTGGTTGTGCAAGTATTGCTACATCTTTTCTTTTTACCCCAAGTGAGCGTATAAAACAGCAGATGCAAGTTAGTGCACACTACCATAACTGCTGGAATGCCTTTGTTGGTGTTGTTGCAAAGGGTGGATTGCGTGGATTATATACTGGGTGGGGAGCTGTTCTTTGCAGAAATGTACCACACTCAATTATCAAGTTCTATACATATGAAAGTTTGAAGGGATTGATGAAATCTAATGCTCAACAAACTACTTCACAAACGTTAGTATGTGGAGGAGTAGCTGGATCTACTGCCGCTTTGTTTACCACTCCTTTTGATGTTGTAAAGACCAGATTACAAACGCAAATACCAGGATCTCTGAGCCCATATAAAAGTGTAATTCAAGCACTCTATGAAATAGGCAAGAAAGAAGGTCTGAAAGGCCTTTATAGGGGCCTGACTCCAAGACTGATTATGTACATGTCTCAAGGTGCAATCTTCTTCTCCTCTTATGAATTTTTGAAGAGACTTTTTTCTCTCGAGTTGCCGAACATGATACTGCAAGAGTGCAACACCGACAAATGA 1665 40.18 MSSSEPCVKETPALGLNCLTVTQKMSLLEPCKYHSTSSVWSLLNGGSDMSAKSWKGKGLTSVRILHDMGKIYGWMNCVSHSEAGYPVKVANTGSMKANAFKARDGLHEAGVCISGASSFLVHELISETSRNTPMFQSINVSSFFIRKLEIKMLENVYMASRILMIVQDNKADGSLVESPNPDILAAHSAPSVDGALDNLDYRQKTNSSSEQHENKTKKLDKLIVENEYNRENSSLTREKSCYTIAKQEHAFAGALAGVFVSLCLHPVDTIKTVVQSYHAEQKSLSYIGKSIVSDRGLSGLYRGISTNIASSAPISAVYTFTYESVKGALLPLLQEIFLGSLLLLSPSPSRSSEYAEEEYRSIVHCMAGGCASIATSFLFTPSERIKQQMQVSAHYHNCWNAFVGVVAKGGLRGLYTGWGAVLCRNVPHSIIKFYTYESLKGLMKSNAQQTTSQTLVCGGVAGSTAALFTTPFDVVKTRLQTQIPGSLSPYKSVIQALYEIGKKEGLKGLYRGLTPRLIMYMSQGAIFFSSYEFLKRLFSLELPNMILQECNTDK 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2613560 2619524 + CcPI632755_01g002740.1 Cco01g0274 169136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0274 554 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 179 539 - GO:0000095(PANTHER)|GO:0005743(PANTHER)|GO:0009941(PANTHER)
Cco01g0274 554 ProSiteProfiles Solute carrier (Solcar) repeat profile. 449 537 IPR018108 -
Cco01g0274 554 Pfam Mitochondrial carrier protein 360 445 IPR018108 -
Cco01g0274 554 Pfam Mitochondrial carrier protein 248 329 IPR018108 -
Cco01g0274 554 Pfam Mitochondrial carrier protein 449 539 IPR018108 -
Cco01g0274 554 SUPERFAMILY Mitochondrial carrier 248 534 IPR023395 -
Cco01g0274 554 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 328 IPR018108 -
Cco01g0274 554 ProSiteProfiles Solute carrier (Solcar) repeat profile. 359 442 IPR018108 -
Cco01g0274 554 Gene3D Mitochondrial carrier domain 205 350 IPR023395 -
Cco01g0274 554 Gene3D Mitochondrial carrier domain 356 549 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0274 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0274 Cco-Chr1:2613560 Cco08g0800 Cco-Chr8:19839261 3.00E-34 dispersed
Cco10g2213 Cco-Chr10:35174602 Cco01g0274 Cco-Chr1:2613560 4.40E-06 dispersed
Cco01g0274 Cco-Chr1:2613560 Cco05g2345 Cco-Chr5:31967542 8.50E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g321 . . . . . . . . . . Cma02g01450 . Car02g01217 . . . Cpe05g00338 . . . . . . . . . . . . . . Cone8ag0303 . . . . Csa05g00280 Chy09g01229 . . . . . Bpe08g01484 . . . . Cmo02g01486 . . . . . . . Bhi12g00262 . . . . . . Cla01g00261 Cam01g0267 Cec01g0259 Cco01g0274 Clacu01g0266 Cmu01g0255 Cre09g2252 Lsi09g00256 . . Cme09g01764
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006178 1 3 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 4 6 1 37