Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0280 ATGGGTAACCGAAGATTTGCGCAGGTTTCCACTAGCGATGAGGAAGATGAAATACCGGCAACAAAGCAGCAATCCTCCAATTCAGACGACAACTTCCCAATTCGCAGGAAGAGGAAGAAGATGAAGCTTCAAGAGGAGGAGGAGGAGGCGGAAGGGGATGAGAAGCATCGCAGGAGTAGAAAAAGTAGTAACAAGGGAGAGAAGGAGGTGGAAGCGTCTAAACAACGGCAGGCGGAAGATGAAGATGAGGATGATCAGTCCCAAGAGGATGCCAAGCCGATTGGGGATGTTGTTAGGGTTTCTGGAAAAGGAAGAGGAAGGAAGAATCATTACAATGCGTTTGAATATGATGGCAACAGATATGATCTTGAGGATCCGGTACTTCTAGTTCCTGAGGACAAGGATCAAAAACCTTATGTGGCAATTATAAAGGATATTACTCAGAACAAAGATGGCATGATGGTCACTGGGCAGTGGTTTTACCGTCCTGAAGAAGCTGAAAAAAAGGGTGGTGGAAGTTGGCAATCACATGATACTCGAGAGCTGTTTTATAGTTTCCACCGTGACCAGGTTCCTGCAGAATCTGTAATGCACAAATGTGTTGTGCATTTTGTTCCATTGCATAAGCAACTTCCAATTCGTAAGCAACATCCTGGATTCATTGTGCGAAAAGTGTATGACACAGTTGAAAGAAAACTTTGGAAGCTAACTGATAAGGACTACGAAGATTCCAAGCAGCAGGAAATTGATGAACTTGTCAAGAAGACTATGTCGCGGTTGGGAGATCTCCCTGATATTGAGCCTGAAGATGCCCCAGCTGATCAAGAAGATCAGTTGAAAACTAAAAGGAGTTTCAAAAGGAAGAATATTTCTCCTGTTGATGTTACGAGAGATGAATCAGAAACAACCAGATCTGATCATGGCACAAAAGCTGAAACACCAGGAAGCTGTACTACAAATCGATCAGAGTACTACTCCATTTTAGAAATATTTGATGTTCTAACAGGTGAAACTCATCGAGATAGATGGTTGGAAAAACTTTTGGAGGGGGTTCAGTACATATGTCATTCTCCTGAAAAAACACGTGAAGGTGATATAGGAAAAACTGCTGCTAATGGTGTCAACCTTGAAAATAAAAATCCAGAATTGGCAATTGCAGCAGAGAACAATGCTAAGAGTGGCAAGTCTTTTCTCTGGCCAGATGCAGCTGTTCCGGCAATAACTGCTCTTGAGAAGGTGTGCAATGATGCTCTATCTGCTGATTTTCAGAAATATAACCAAAAAATGCGGCAATTGGTGTTCAATCTCAAGAATACTCGTTTACTGGCTCAACGGCTGTTAAATGGAGAGTTGGAACCATCCAAAATCTTGAATATGTCACCCAATGAGCTCAGGGAAGGATTGACTGCTGAGGAGTCGGCAGCAACTAAAGAGCCTGATGAGTCTGAGCGTATGCAGATGACAGATGCTCGGTGTTCAAGGTGCACAGAATGTAAAGTGGGTGTCAGGGACATCATCCAAACAGGACATGGACAACGATATAAGTTGGAGTGCATTGCCTGTGGTCATTCTTGGTATGCCTCTAGGGATGAACTATCCATGCTGACAATAGATGCGGTAACTAATTCTACCAAGAGTGTCGGAACCGCACCATGGGCAACTGCTAAATTTGAAGATGTAGAGAAGAGTCTACTCAGTCCTCGTGAATCCGAAAAAGCTGCCGAGGACCTCTTCAAGAAGACGAGTGAAGCGTACATTCCCGTAGTGGATAGTCAGAAATCTAACAAGTCTAAAAAGGAAGATAATACAGAACCTGCCAAAAATACACAAGTTAAGAGTAAAGGTTTTGCAAAGAGGTCCTGCTGA 1866 43.25 MGNRRFAQVSTSDEEDEIPATKQQSSNSDDNFPIRRKRKKMKLQEEEEEAEGDEKHRRSRKSSNKGEKEVEASKQRQAEDEDEDDQSQEDAKPIGDVVRVSGKGRGRKNHYNAFEYDGNRYDLEDPVLLVPEDKDQKPYVAIIKDITQNKDGMMVTGQWFYRPEEAEKKGGGSWQSHDTRELFYSFHRDQVPAESVMHKCVVHFVPLHKQLPIRKQHPGFIVRKVYDTVERKLWKLTDKDYEDSKQQEIDELVKKTMSRLGDLPDIEPEDAPADQEDQLKTKRSFKRKNISPVDVTRDESETTRSDHGTKAETPGSCTTNRSEYYSILEIFDVLTGETHRDRWLEKLLEGVQYICHSPEKTREGDIGKTAANGVNLENKNPELAIAAENNAKSGKSFLWPDAAVPAITALEKVCNDALSADFQKYNQKMRQLVFNLKNTRLLAQRLLNGELEPSKILNMSPNELREGLTAEESAATKEPDESERMQMTDARCSRCTECKVGVRDIIQTGHGQRYKLECIACGHSWYASRDELSMLTIDAVTNSTKSVGTAPWATAKFEDVEKSLLSPRESEKAAEDLFKKTSEAYIPVVDSQKSNKSKKEDNTEPAKNTQVKSKGFAKRSC 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2663793 2670798 - CcPI632755_01g002800.1 Cco01g0280 169142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0280 621 ProSiteProfiles TFIIS central domain profile. 339 493 IPR003618 GO:0006351(InterPro)
Cco01g0280 621 MobiDBLite consensus disorder prediction 589 621 - -
Cco01g0280 621 MobiDBLite consensus disorder prediction 1 108 - -
Cco01g0280 621 SUPERFAMILY Elongation factor TFIIS domain 2 402 465 IPR036575 GO:0006351(InterPro)
Cco01g0280 621 Pfam BAH domain 121 236 IPR001025 GO:0003682(InterPro)
Cco01g0280 621 Gene3D - 374 466 IPR036575 GO:0006351(InterPro)
Cco01g0280 621 Coils Coil 36 56 - -
Cco01g0280 621 Gene3D - 99 326 IPR043151 -
Cco01g0280 621 SMART mid_6 359 474 IPR003618 GO:0006351(InterPro)
Cco01g0280 621 MobiDBLite consensus disorder prediction 31 81 - -
Cco01g0280 621 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 607 - -
Cco01g0280 621 CDD BAH_plant_3 101 246 - -
Cco01g0280 621 MobiDBLite consensus disorder prediction 262 317 - -
Cco01g0280 621 MobiDBLite consensus disorder prediction 593 607 - -
Cco01g0280 621 ProSiteProfiles BAH domain profile. 119 237 IPR001025 GO:0003682(InterPro)
Cco01g0280 621 SMART BAH_4 119 237 IPR001025 GO:0003682(InterPro)
Cco01g0280 621 Pfam Transcription factor S-II (TFIIS), central domain 335 477 IPR003618 GO:0006351(InterPro)
Cco01g0280 621 MobiDBLite consensus disorder prediction 273 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0280 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0280 Cco-Chr1:2663793 Cco10g1437 Cco-Chr10:27465702 1.00E-19 dispersed
Cco01g0280 Cco-Chr1:2663793 Cco06g1885 Cco-Chr6:29053798 6.60E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g322 . . . . . . . . . . Cma02g01453 Cma15g01226 Car02g01219 Car15g01106 . . Cpe05g00334 . . . . . . . . . . . . . . Cone8ag0305 . Cone6ag0779 Cone9ag0784 . Csa05g00281 Chy09g01228 . . . . . . . . . . Cmo02g01488 Cmo15g01291 . . . . . Cpe13g00157 Bhi12g00260 . . . . . . Cla01g00265 Cam01g0272 Cec01g0265 Cco01g0280 Clacu01g0272 Cmu01g0260 Cre09g2248 Lsi09g00260 . . Cme09g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006093 0 1 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 4 3 1 1 1 1 1 1 1 1 4 4 1 39