Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0286 ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGGGGAGGAGGAGTTGGTGGCTCTGGATCAGGGCTGCCTACGGCTGGATCACATGCCTCCCCTGTATTCCGGCCGATGGCTAACCAGGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCAGTTGGATCAACATATGCTGTTGAGCCATCACATTCGAATTATCTTCGTGGGATGGGTATCAATGTCTCAGCTGGAGTGAACTCTAGTGAACCTGTAAAGAAGAAGAGAGGGAGACCCCGGAAATATGCCCCAGATGGGCAGGTCTCATTGGGTTTGTCTCCCATGTCTGCTGGTTCTAAGCTCACTCCGGGTTCGAATTCGTCAACCCCCAGACGACGACGAGGGCGGCCACCTGGTTCTGGAAGGAAACAACAATTAGCTCTCCTTGGTGATTGGATGAACAATTCAGCTGGACTAGCCTTTGCTCCACATGTTATTCACGTTGGAGCTGGAGAAGACATTGTAGCAAAAGTGTTGTCATTCGCACAGCAGAGGCCAAGGGCTCTTTGCATATTGTCTGGCAATGGGACTGTTTCTTCTGTAACACTACGTCAGCCTGCATCTACTGGCGTGAGCGTCACTTACGAGGGTCATTTCCAGATATTGTGCTTATCTGGTTCTTACTTGGTGGCTGAAGATGGTAGTCCTCGAAGTAGGACAGGAGGTATTAGTGTTTCTCTCTCTAGTCCTGATGGTCATGTCATTGGTGGCGGTGTTGCCGTTCTTATGGCAGCTGGCCCTGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTGCAAAGATAAAAAACAAGCAGGTGGCTGGTTCGAAAAGCAATGATGGTTCTGGAAATGAGCACCACGACAATTTGGTTTTGCCCACAAGTGCCCCATCTGCCCAAACCTACAATCCATCTCCAATTGGTGTTTGGCCTGGTTCGCGTTCAGTTGATATTGATGCTAACATATGGTATGAGACTTCATTTCAAGTTTCTCAAGTCAATGTTGATTTTATTGGGCAGAGTTTCTGGTTTTTGGAGGGGTATCTCATTCCAATTTCCTTTTCAAGGGCTTCTGCTCGAGATGAAAAGGATTATATGATGGTGTTGGTTAGAAACAGAACTGGAATGGAATAG 1173 47.31 MDGREGMALSGGSASYYIHRGGGVGGSGSGLPTAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYAVEPSHSNYLRGMGINVSAGVNSSEPVKKKRGRPRKYAPDGQVSLGLSPMSAGSKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGDWMNNSAGLAFAPHVIHVGAGEDIVAKVLSFAQQRPRALCILSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVAEDGSPRSRTGGISVSLSSPDGHVIGGGVAVLMAAGPVQVVVCSFVYGAKIKNKQVAGSKSNDGSGNEHHDNLVLPTSAPSAQTYNPSPIGVWPGSRSVDIDANIWYETSFQVSQVNVDFIGQSFWFLEGYLIPISFSRASARDEKDYMMVLVRNRTGME 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2755950 2762141 + CcPI632755_01g002860.1 Cco01g0286 169148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0286 390 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 73 297 IPR039605 GO:0003680(InterPro)
Cco01g0286 390 ProSiteProfiles PPC domain profile profile. 158 301 IPR005175 -
Cco01g0286 390 MobiDBLite consensus disorder prediction 85 143 - -
Cco01g0286 390 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 276 - -
Cco01g0286 390 Gene3D - 163 290 - -
Cco01g0286 390 MobiDBLite consensus disorder prediction 112 133 - -
Cco01g0286 390 CDD DUF296 163 275 IPR005175 -
Cco01g0286 390 MobiDBLite consensus disorder prediction 286 312 - -
Cco01g0286 390 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 275 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0286 Cco-Chr1:2755950 Cco08g1074 Cco-Chr8:22542348 5.00E-52 dispersed
Cco01g0286 Cco-Chr1:2755950 Cco06g0387 Cco-Chr6:4285278 7.40E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0286 - - - 0.0