Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0288 ATGATCTGTATCTCATCAATTCGCACTCTTCTCCGAAGAAATTTCTTCAGCGTTCGATCATTATCTTCTTCACCTCTGGTTTCATATACCCGATTCTTCCCCGATTCGAAGCAAACCCTTTTGCATAATCAGCAGTGTTTTTCTGTAACTCGTTTCGTTTCACCAATTAATTCAGGTTCTTCGCTTATCGGCTCGTTTTCGACTCGCTTGGAACATACTATGGCCACCCCTTCCAAGACTTCAGTCCATGACTTCACCGTCAAGGATGCTAGTGGAAAGGATGTTGACCTCAGCATTTACAAAGGAAAGGTCCTGTTGATTGTCAACGTCGCTTCACAATGTGGCTTGACTAATTCGAATTACACTGAACTGAGTCAGCTGTATGAAAAATACAAGGGTCATGGATTTGAGATTCTTGCATTTCCGTGCAACCAATTTGGAGGCCAGGAGCCAGGAACCAATGAAGAGATTGTGCAATTTGCTTGCACCCGTTTTAAGGCTGAGTACCCCATTTTTGACAAGGTGGACGTGAATGGAAACAATGCGGCTCCTCTGTACAAGTTCTTGAAGTCAAGCAAAGGTGGGCTCTTCGGAGATGCCATTAAGTGGAACTTCTCCAAGTTCTTGGTGGACAAAGATGGAAACGTTGTTGATCGTTACGCCCCAACAACTTCCCCGCTCAGCATTGAGAAGGATGTGAAGAAGCTGCTTGGAGTTGCTTAA 723 44.54 MICISSIRTLLRRNFFSVRSLSSSPLVSYTRFFPDSKQTLLHNQQCFSVTRFVSPINSGSSLIGSFSTRLEHTMATPSKTSVHDFTVKDASGKDVDLSIYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKGHGFEILAFPCNQFGGQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKFLKSSKGGLFGDAIKWNFSKFLVDKDGNVVDRYAPTTSPLSIEKDVKKLLGVA 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2771923 2773890 - CcPI632755_01g002880.1 Cco01g0288 169150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0288 240 PRINTS Glutathione peroxidase family signature 136 152 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cco01g0288 240 PRINTS Glutathione peroxidase family signature 100 117 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cco01g0288 240 PRINTS Glutathione peroxidase family signature 201 210 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cco01g0288 240 CDD GSH_Peroxidase 81 233 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cco01g0288 240 Pfam Glutathione peroxidase 82 190 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cco01g0288 240 FunFam Glutathione peroxidase 73 239 - -
Cco01g0288 240 SUPERFAMILY Thioredoxin-like 81 237 IPR036249 -
Cco01g0288 240 Gene3D Glutaredoxin 73 238 - -
Cco01g0288 240 ProSiteProfiles Glutathione peroxidase profile. 72 240 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cco01g0288 240 ProSitePatterns Glutathione peroxidases active site. 102 117 IPR029759 -
Cco01g0288 240 PANTHER GLUTATHIONE PEROXIDASE 73 237 IPR000889 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0005829(PANTHER)|GO:0006979(InterPro)
Cco01g0288 240 ProSitePatterns Glutathione peroxidases signature 2. 139 146 IPR029760 -
Cco01g0288 240 ProSiteProfiles Thioredoxin domain profile. 76 238 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0288 K00432 - - csv:101220688 402.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0288 Cco-Chr1:2771923 Cco07g1636 Cco-Chr7:30443943 1.80E-68 dispersed
Cco01g0287 Cco-Chr1:2762419 Cco01g0288 Cco-Chr1:2771923 8.00E-71 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g331 . . . . . . . . . . Cma02g01461 Cma15g01220 Car02g01226 Car15g01101 . . . . . . . . . . . . . . . . . Cone8ag0312 . Cone6ag0772 Cone9ag0778 . Csa05g00290 Chy09g01216 . . . . Bda09g00043 . . . Bma12g00376 . Cmo02g01496 Cmo15g01286 . . . . . . Bhi12g00244 . . . . . . Cla01g00272 Cam01g0281 Cec01g0273 Cco01g0288 Clacu01g0280 Cmu01g0268 Cre09g2241 Lsi09g00268 . . Cme09g01753
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198