Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco01g0289 | ATGTTGAAGTTTCCGCGGCGGAAACGATCGCCGGCGGCAACAGAGGAGACTCCAAAAAATGCAACGGTTATTGACAACGAGGAGACCGCGGCGGCGAAGGCGGTGGTGTGTGTTAGCGGCATGAGTTGCTCTGCTTGCGCTGTGTCAGTTGAGAATTCCATCAAACACCTTCCAGGCATTCTCGATGCGGCCGTCGATTTCTTGAACGATAAGGCTCAAATCCTCTATCTCCCCAATCTCATCGACGTAGAGGCAATACTTAAAGCAATTGAAAATGCTGGATTTCAAGCTACAATATCAAACGATGGGACCAATCATCGATCGAGAGAAGTATGTCGAATCCGAGTAAATGGGATGGGGTGCAATTCTTGCTCTTCCATGGTAGAGTCAGTTTTGGAAGCAATGTATGGAGTACAAAAGACTCACATTGCTTTGTTCAACGAGGAAGCAGAAGTTCACTATGATCCAAAGGTTGTTAATTGCAATCAGTTCATTGTAGCCATACAAGATATTGGATTTGAAGCCTTACCTATAACCATTGGTGAACACATTACCAAGATTGAGCTAAAGATTGACGGTATGCATGATGAAAACTCAACAACAAAAGTTAAAGACACACTCGAATCGGTCCTGGGAATTGACGATATCAATATCGATACGACATTAAGCAAAGTTACCATCTCCTATAGGCCTGATATAACAGGACCTAGAACTTTCATTGACGTCCTCGAGTCGATCAAATCCGAGCATTTCAAGGTGACAATATATCCCGAAGAAAGAGGACGAGAAACTCGTAAGGAGAAAGAAATTAAGCAACATTATAAGTACCTTCTATGGAGCTCTGCTCTTTCTATACCTGTTTTCTTAACTTCAATGGTATTCATGTATATACCTGGAATCAAGCAGACTTTAGATATCAAAGTTGTCAATATGATGAATGTTGGACATATAATCAGGTGGAATTTGTCGACTCCGGTGCAGTTCGTCATAGGTTCAAGATTCTACATCGGATCATACAAAGCATTGCGTCGCGGTTCTGCTAACATGGATGTATTGGTTACTTTGGGAACAAATGCAGCTTATTTCTATTCTGTTTATATAGTGTTAAGAGCAGCTACATCTCCTACTTTCAATGGTACAGATTTCTTTGAAACTAGTTCGATGTTGATTACATTCATTCTACTTGGTAAGTATTTGGAGGTTTTAGCAAAAGGAAAGACCTCTGAGGCCATTGCCAAGCTTAAACACTTGGCTCCCGAGACGGCCACACTCTTGACTTTAGATGGCCATGGAAATGTGATCGGTGAAATGGAAATCAGTAGCGAGTTGATTCAAAAGAATGATGTAATCAAGATTACGCCGGGTGCGAGAGTAGCTTCTGATGGTCTCGTAGTATGGGGCGAAAGTCATGTTAATGAGAGTATGATCACAGGAGAAGCGAAACCGGTAACTAAAAGGACCGGCGACAAGGTGATAGGAGGAACTGTGAATGAAAATGGGGTATTGCATATAAAGGCAACACATGTTGGATCAGAGAGTTCTTTAGCGCAAATCGTTCGACTTGTCGAATCATCCCAGTTGGCAAAAGCTCCTATTCAGAAATTTGCAGATCATATCTCCAAGTATTTTGTGCCTCTGGTAATTGTACTTTCTTTTCTCACTTGGATTGCCTGGTTTTTAGCTGGAAAGTTACATCTCTATCCTAAGTCATGGTTGCCTTCTTCAATGGACAGTTTTGAGCTTGCTCTCCAATTTGGGATTTCTGTTATGGTCATAGCTTGCCCTTGTGCTCTCGGCCTTGCCACCCCGACCGCCGTGATGGTCGGTACCGGAGTCGGTGCATCTCAAGGTGTACTAATAAAAGGCGGTCAAGCATTAGAATATGCTCATAAGGTGAGTTGCATTGTGTTTGATAAGACAGGAACTCTAACAATTGGAAAGCCAGTGGTTGTAAATGTAAAACTTATAGACACAATAGTACTTGAAGAACTGCTTGAACTCACTGCTGCAACCGAGGTTAATAGTGAGCACCCAGTAGCCAAGGCCATTGTTGAATATGCCAAACAATTCAAGAAAGAACAGAACCCCATTTGGCCAGAAGTTCAAGAATTCATATCCATTCCTGGCCATGGAGTAGAAGCCATAGTAATGAACAAGAAAATAATGGTTGGCAACAAGAGCTTGATGATGAATAATGACATTGAAATCTCGGGGGAAGCAGAAAGCTTCCTTGTCGACGCCGAAGGTATGGCACAAACAGCGGTTTTGGTGGCCATAGATCGAATGGTGTCGGGAGTTATCGCAGTGTCGGATCCATTGAAACCAGGTGCCAAAGAAGTTATTTCCATTCTCAAGTCTATGGAAGTGAAGAGCATCATGGTGACAGGTGACAATTGGGGTACTGCAAATTCCATTGCCAAAGAAGTTGGCATTGAAACAGTCATTGCAGAAGCCAAACCTCAGCAGAAAGCAGAGGAAGTGAAGAATCTTCAGATAGCGGGCCACACGGTGGCAATGGTCGGAGACGGGATCAACGACTCGCCTGCCCTAGTAGCAGCAGATGTCGGGATGGCGATTGGAGCCGGCACGGACATTGCCATTGAGGCAGCAGACATTGTTCTAATGAAAAATGACTTGCAAGATGTTATAACTGCCATTCATCTTTCAAGGAAAACCTTTGCTAGAATCCGTTTGAATTACATTTGGGCTTTAGGTTATAATCTTCTTGCCATACCGATTGCGGCGGGCGTCCTGTTCCCTTCGACTCGGTTTCAGTTACCGCCGTGGATCGCTGGAGCCGCCATGGCAGCTTCTTCTGTTAGTGTGGTCTGCAGTTCTTTGATGTTGAAGAAATACAAGAGACCCAAGAAGCTTGATGAAGTTGAGATTCAAATGAATGGAATAGTGGTTGAATGA | 2916 | 43.48 | MLKFPRRKRSPAATEETPKNATVIDNEETAAAKAVVCVSGMSCSACAVSVENSIKHLPGILDAAVDFLNDKAQILYLPNLIDVEAILKAIENAGFQATISNDGTNHRSREVCRIRVNGMGCNSCSSMVESVLEAMYGVQKTHIALFNEEAEVHYDPKVVNCNQFIVAIQDIGFEALPITIGEHITKIELKIDGMHDENSTTKVKDTLESVLGIDDINIDTTLSKVTISYRPDITGPRTFIDVLESIKSEHFKVTIYPEERGRETRKEKEIKQHYKYLLWSSALSIPVFLTSMVFMYIPGIKQTLDIKVVNMMNVGHIIRWNLSTPVQFVIGSRFYIGSYKALRRGSANMDVLVTLGTNAAYFYSVYIVLRAATSPTFNGTDFFETSSMLITFILLGKYLEVLAKGKTSEAIAKLKHLAPETATLLTLDGHGNVIGEMEISSELIQKNDVIKITPGARVASDGLVVWGESHVNESMITGEAKPVTKRTGDKVIGGTVNENGVLHIKATHVGSESSLAQIVRLVESSQLAKAPIQKFADHISKYFVPLVIVLSFLTWIAWFLAGKLHLYPKSWLPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALEYAHKVSCIVFDKTGTLTIGKPVVVNVKLIDTIVLEELLELTAATEVNSEHPVAKAIVEYAKQFKKEQNPIWPEVQEFISIPGHGVEAIVMNKKIMVGNKSLMMNNDIEISGEAESFLVDAEGMAQTAVLVAIDRMVSGVIAVSDPLKPGAKEVISILKSMEVKSIMVTGDNWGTANSIAKEVGIETVIAEAKPQQKAEEVKNLQIAGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKNDLQDVITAIHLSRKTFARIRLNYIWALGYNLLAIPIAAGVLFPSTRFQLPPWIAGAAMAASSVSVVCSSLMLKKYKRPKKLDEVEIQMNGIVVE | 971 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 2778041 | 2785540 | - | CcPI632755_01g002890.1 | Cco01g0289 | 169151 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco01g0289 | 971 | ProSitePatterns | Heavy-metal-associated domain. | 38 | 67 | IPR017969 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | FunFam | Probable copper-transporting ATPase HMA5 | 746 | 897 | - | - | |
| Cco01g0289 | 971 | ProSiteProfiles | Heavy-metal-associated domain profile. | 32 | 98 | IPR006121 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 381 | 918 | IPR023298 | - | |
| Cco01g0289 | 971 | PRINTS | P-type cation-transporting ATPase superfamily signature | 840 | 859 | - | - | |
| Cco01g0289 | 971 | PRINTS | P-type cation-transporting ATPase superfamily signature | 472 | 486 | - | - | |
| Cco01g0289 | 971 | PRINTS | P-type cation-transporting ATPase superfamily signature | 863 | 875 | - | - | |
| Cco01g0289 | 971 | PRINTS | P-type cation-transporting ATPase superfamily signature | 765 | 776 | - | - | |
| Cco01g0289 | 971 | PRINTS | P-type cation-transporting ATPase superfamily signature | 636 | 650 | - | - | |
| Cco01g0289 | 971 | PRINTS | P-type cation-transporting ATPase superfamily signature | 787 | 797 | - | - | |
| Cco01g0289 | 971 | CDD | HMA | 38 | 98 | IPR006121 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | SUPERFAMILY | HMA, heavy metal-associated domain | 180 | 247 | IPR036163 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | FunFam | ATPase copper transporting beta | 106 | 178 | - | - | |
| Cco01g0289 | 971 | SUPERFAMILY | HMA, heavy metal-associated domain | 110 | 181 | IPR036163 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | Gene3D | - | 603 | 897 | IPR023214 | - | |
| Cco01g0289 | 971 | CDD | P-type_ATPase_Cu-like | 277 | 936 | - | - | |
| Cco01g0289 | 971 | FunFam | Copper-transporting ATPase HMA5 | 31 | 102 | - | - | |
| Cco01g0289 | 971 | Gene3D | - | 31 | 105 | - | - | |
| Cco01g0289 | 971 | ProSiteProfiles | Heavy-metal-associated domain profile. | 185 | 251 | IPR006121 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | Pfam | Heavy-metal-associated domain | 37 | 95 | IPR006121 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | Pfam | Heavy-metal-associated domain | 189 | 246 | IPR006121 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | Pfam | Heavy-metal-associated domain | 114 | 174 | IPR006121 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | Pfam | haloacid dehalogenase-like hydrolase | 633 | 854 | - | - | |
| Cco01g0289 | 971 | FunFam | Copper-transporting ATPase 1, putative | 404 | 526 | - | - | |
| Cco01g0289 | 971 | PANTHER | P-TYPE CATION-TRANSPORTING ATPASE | 20 | 964 | - | - | |
| Cco01g0289 | 971 | CDD | HMA | 114 | 175 | IPR006121 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | CDD | HMA | 188 | 254 | IPR006121 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | Gene3D | - | 109 | 177 | - | - | |
| Cco01g0289 | 971 | Pfam | E1-E2 ATPase | 417 | 614 | - | - | |
| Cco01g0289 | 971 | ProSiteProfiles | Heavy-metal-associated domain profile. | 110 | 176 | IPR006121 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | SFLD | Haloacid Dehalogenase | 618 | 892 | - | - | |
| Cco01g0289 | 971 | Gene3D | - | 186 | 255 | - | - | |
| Cco01g0289 | 971 | Gene3D | - | 404 | 526 | - | - | |
| Cco01g0289 | 971 | NCBIfam | HAD-IC family P-type ATPase | 389 | 928 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco01g0289 | 971 | NCBIfam | heavy metal translocating P-type ATPase | 349 | 949 | IPR027256 | GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro) | |
| Cco01g0289 | 971 | SUPERFAMILY | HMA, heavy metal-associated domain | 33 | 102 | IPR036163 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | ProSitePatterns | Heavy-metal-associated domain. | 116 | 146 | IPR017969 | GO:0046872(InterPro) | |
| Cco01g0289 | 971 | PRINTS | H+-transporting ATPase (proton pump) signature | 871 | 896 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco01g0289 | 971 | PRINTS | H+-transporting ATPase (proton pump) signature | 840 | 856 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco01g0289 | 971 | Gene3D | - | 643 | 720 | IPR023299 | GO:0000166(InterPro) | |
| Cco01g0289 | 971 | Gene3D | - | 721 | 771 | IPR023299 | GO:0000166(InterPro) | |
| Cco01g0289 | 971 | SUPERFAMILY | Calcium ATPase, transduction domain A | 436 | 522 | IPR008250 | - | |
| Cco01g0289 | 971 | SFLD | p-type atpase | 618 | 892 | IPR044492 | - | |
| Cco01g0289 | 971 | SUPERFAMILY | HAD-like | 635 | 946 | IPR036412 | - | |
| Cco01g0289 | 971 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 638 | 644 | IPR018303 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g0289 | Cco-Chr1:2778041 | Cco04g0619 | Cco-Chr4:20187307 | 0.00E+00 | dispersed | |
| Cco01g0289 | Cco-Chr1:2778041 | Cco02g1330 | Cco-Chr2:25164598 | 3.90E-239 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco01g0289 | K17686 | - | csv:101220448 | 1746.87 |