Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0292 ATGTCAACGCTGCCAGAAAGATTATTTGCCATCTTCTACCGGTTGGAGCTTTTTGCAGAACTTCTTTCAGCCTTGCTGTTTCTTGCTTGTAAAATGAATTTGGAGAGTCAAAACAAGAAGAAAGAGTATGCTGCGGATATTTTCTCCATAAAGGAGGCCCAAATGCGTATTCAACCTTTCATCCATCAAACCCCAGTTTTGTCTTCTGAGACTATTAATGCTGCTTCAGGAAAACAACTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCATTTAAATTCAGAGGTGCCTGCAATGCTATATTATCACTTGATGAGGACCAGGCTGCTAAAGGGGTTGTGACACATAGCAGTGGCAACCATGCTGCAGCTTTGTCTTTGGCTGCAAAACTGCGAGGAATCCCTGCATATATAGTTATGCCAGAAAGTGCTCCAAAATGTAAAGTTGAAAATGTGATACGTTATGGTGGTCAGGTTATTTGGAGCAAAGACACAATACAGTCGAGGGAAACAACTGCCACGAAGGTTATGCAAGAAACTGGTGCACTTCTCATACACCCATATAATGATGGGCGCATAATAAGCGGGCAAGGTACCATCTCATTGGAGCTTCTGGAACAAGTCTCACAATTAGACACTTTAATCATTCCAATAAGTGGTGGTGGTTTGATATCAGGAATTTCAGTGGCGGCAAAAGCCATCAATCCTGCCATCCGGATTTTTGCTGCAGAACCTAAGGGAGCTAATGATGCAGCCATGTCAAAAGCCGCTGGTAAGATAGTAAAACTAGCAGAGACCACCACCATAGCCGATGGTCTTCGAGCTTTTCTCGGTGACCTTACCTGGCCAATAGTAAGAGATTTGGTGGATGATGTAATAACTGTGGAGGACACTGAGATAGTTGAAGCAATGAGACTTTGTCTTGAAGTGCTGAAAGTTGTTGTGGAACCTAGTGGGGCAATAGGCCTTGCTGCTGTTCTCTCTGATAGTTTCAAGCAAAACCCTTCATGGAAAGATTGCAACTGCATTGGCATTATACTTTCAGGAGGTAATGTTGATCTTGGCCATCCCCATGTGATTTTCCATTCCTTGGGAGACTTGTTTCCAATCCTTCGTTTATGCTGTGAAGCAAATATTGGTTTTAGGGTTTCAATCAGTATCACTTCACTTGCTTCATCAAGCTCTCAATTTGTTCATCCTCTTCTTCTTACGGCCATGGAGAGCTCTTCTCCGGCTTCATGCTGGAGCAATGTCGTGAAATCTCAGCCAGCTCCGAAGCCTCAGCATCAGATTCCGACCTCCTCCGTCCAAGTATTCGCCGATAGCTGCAAGTCCAGTAAAGGCGTTGCTGTTGCCGTTGTTGATGCCAACGCCATTATCCAAGGGGGTGACAAGCTTTCCTCATCCGCGGATAAGTTTGTTTCAGTTCCTGAGGTTTTGGATGAGATTCGCGATCCCGTGTCTCGCCATAGGCTCGCCTTCGTCCCCTTCACTCTTGAATCCATGGATCCTTCGCCTGATGCTCTCAATAAAGTAATCAAGTTTGCAAGGGCTACTGGTGACTTACAGACGCTTTCAGATGTTGATATTAAACTTATTGCTCTCACTTACACATTGGAGACTCAGATTCATGGGACCAAACATCTTCGTGAGTGTCCTCCCCCTGTCCACATGGTTAATACAAAGAGGTTACCTGAGAAAGCCATGCCTGGGTGGGGCTCTAATGTTCCTAATCTGGAAGAATGGGAAGCATTAGAGCAAGATGTTGATGATCCGTCCAATTCGACATCAAAGATTCTGCCTTTGCAGGATTTAAACCTGAACATCATCCCTTCAGATGGCCAACCTGAAGATCTTTCACTAGAGCACAAGGATGAGAATAACTTGGAGCATCAAGATGAAACTGAGAGTGATTCAAGAAGATCAAGGAGATATCCTCCAAAGAAAAAGGAAATTAATATTGAAGGGAAGATGGTGGCTGATGGAATTGATGCATCTCAGGGACAATATGATGATAATGAGGGTGGCTGGACACCTGCTGTCAGTCGAAGTACTCAGAGAAGATATCATAGGAGGAAAGCCAGACGTGAATATTATGAGGCCTTAGCTGAAAAGGATGGTCAGCAACATGTTGAAACCACAGATGGTGACATCCAAGTGGAAACTAATGGATCAGGTCAATCACAGGATAAAATCTCTGAACGGCTAAATACGGGAAATGATAATGAGAGTCAGATAGAAGGGACAAACAATAAGGAAAACCTCTCAGAAATTTTAAAGCAGATGAGGCTGGAAGAAGATTCATTAAATGCCCTTCATGTGGAACGGATTGGCACCTCCACAAAAGAAGAATCTGATGGAAGTGAGGTGGAGAATGCTGAGGCTGTTGAGGGCACGTATGATACGGCAAAGGATGAAATGGAACACATGGAGGACCCAAGTCAGACTAATGAAAGTGTAGACACATCAAATGTAGATGATGTTAGCAGTGATCAGAGTTGGATGCTGAGATCCTTGTCTGAATCAAGTGTAGCTTGTGTTACTGGTGACTTTGCGATGCAGAATGTTCTTCTGCAAATGGGTTTACGATTGTTGGCTCCAGGAGGAATGCAGATCCGGCAACTTCACAGGTGGATTTTGAAATGTCACGCCTGCTACAATGTCACAGCTGAAATTGGAAGGATCTTTTGTTCAAAGTGTGGAAATGGTGGAACTTTGCGCAAGGTAGCTGTTACAGTTGGTGAGAATGGAGTTGTGTTAGCTGCCCGTAAGCCGAGGATTACTCTTCGAGGCACAAAATTTTCACTTCCTCTACCGCAAGGTGGAAGGGATGCCATTACCAAAAATCTTGTTTTACGTGAAGATCAACTCCCACAAAAGTTTCTTCATCCCAAAACCAAGAAGAAAGTCAATAAGCAGGGGGATGATTTCTTTGCTGTGGATGATTTCTTCAGCCACCATAATACTGATAAGAGGGCTCCTTTGCAGCCTCCCGTAAGGCAAGCTTTGGCAGTCTTCAGTGGGAAGAGAAATCCGAATGATAACCATTACTCTCGATCTAAGCATAGATAG 3075 43.97 MSTLPERLFAIFYRLELFAELLSALLFLACKMNLESQNKKKEYAADIFSIKEAQMRIQPFIHQTPVLSSETINAASGKQLFFKCECFQKGGAFKFRGACNAILSLDEDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVMPESAPKCKVENVIRYGGQVIWSKDTIQSRETTATKVMQETGALLIHPYNDGRIISGQGTISLELLEQVSQLDTLIIPISGGGLISGISVAAKAINPAIRIFAAEPKGANDAAMSKAAGKIVKLAETTTIADGLRAFLGDLTWPIVRDLVDDVITVEDTEIVEAMRLCLEVLKVVVEPSGAIGLAAVLSDSFKQNPSWKDCNCIGIILSGGNVDLGHPHVIFHSLGDLFPILRLCCEANIGFRVSISITSLASSSSQFVHPLLLTAMESSSPASCWSNVVKSQPAPKPQHQIPTSSVQVFADSCKSSKGVAVAVVDANAIIQGGDKLSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKVIKFARATGDLQTLSDVDIKLIALTYTLETQIHGTKHLRECPPPVHMVNTKRLPEKAMPGWGSNVPNLEEWEALEQDVDDPSNSTSKILPLQDLNLNIIPSDGQPEDLSLEHKDENNLEHQDETESDSRRSRRYPPKKKEINIEGKMVADGIDASQGQYDDNEGGWTPAVSRSTQRRYHRRKARREYYEALAEKDGQQHVETTDGDIQVETNGSGQSQDKISERLNTGNDNESQIEGTNNKENLSEILKQMRLEEDSLNALHVERIGTSTKEESDGSEVENAEAVEGTYDTAKDEMEHMEDPSQTNESVDTSNVDDVSSDQSWMLRSLSESSVACVTGDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACYNVTAEIGRIFCSKCGNGGTLRKVAVTVGENGVVLAARKPRITLRGTKFSLPLPQGGRDAITKNLVLREDQLPQKFLHPKTKKKVNKQGDDFFAVDDFFSHHNTDKRAPLQPPVRQALAVFSGKRNPNDNHYSRSKHR 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2843848 2854050 + CcPI632755_01g002920.1 Cco01g0292 169154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0292 1024 Gene3D - 867 942 IPR036283 -
Cco01g0292 1024 CDD PIN_Nob1-like 464 551 IPR033411 -
Cco01g0292 1024 Gene3D - 93 189 IPR036052 -
Cco01g0292 1024 Pfam PIN domain of ribonuclease 454 540 IPR033411 -
Cco01g0292 1024 MobiDBLite consensus disorder prediction 705 751 - -
Cco01g0292 1024 MobiDBLite consensus disorder prediction 618 653 - -
Cco01g0292 1024 MobiDBLite consensus disorder prediction 667 690 - -
Cco01g0292 1024 Pfam Pyridoxal-phosphate dependent enzyme 57 328 IPR001926 -
Cco01g0292 1024 FunFam L-threonine dehydratase catabolic TdcB 165 354 - -
Cco01g0292 1024 SUPERFAMILY NOB1 zinc finger-like 873 936 IPR036283 -
Cco01g0292 1024 CDD Thr-dehyd 49 354 - -
Cco01g0292 1024 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 47 356 IPR036052 -
Cco01g0292 1024 FunFam 20S-pre-rRNA D-site endonuclease NOB1 444 564 - -
Cco01g0292 1024 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 85 98 IPR000634 GO:0006520(InterPro)|GO:0030170(InterPro)
Cco01g0292 1024 Gene3D - 444 558 - -
Cco01g0292 1024 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 39 356 - GO:0000287(PANTHER)|GO:0003941(PANTHER)|GO:0005524(PANTHER)|GO:0008721(PANTHER)|GO:0018114(PANTHER)|GO:0030170(PANTHER)|GO:0030378(PANTHER)|GO:0070179(PANTHER)
Cco01g0292 1024 MobiDBLite consensus disorder prediction 808 828 - -
Cco01g0292 1024 Gene3D - 56 354 IPR036052 -
Cco01g0292 1024 MobiDBLite consensus disorder prediction 609 653 - -
Cco01g0292 1024 MobiDBLite consensus disorder prediction 714 751 - -
Cco01g0292 1024 Coils Coil 753 773 - -
Cco01g0292 1024 Pfam Nin one binding (NOB1) Zn-ribbon like 873 943 IPR014881 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0292 K11883 - - csv:101221544 1095.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0292 Cco-Chr1:2843848 Cco04g1166 Cco-Chr4:27102492 2.40E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g340 . . . . . . . Bma14g00617 . . Cma02g01465 Cma15g01219 . Car15g01099 . . Cpe05g00323 . . . . . . . . . . . . . . Cone8ag0314 Cone12ag0314 . . . Csa05g00295 Chy09g01211 . Blo03g00335 . . . . Bpe11g00652 . . . Cmo02g01502 Cmo15g01284 . . . . . Cpe13g00161 Bhi12g00235 . . Lac11g2109 . . Lcy12g1665 Cla01g00276 Cam01g0286 Cec01g0279 Cco01g0292 Clacu01g0285 Cmu01g0272 Cre09g2235 . . . Cme09g01748
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006981 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37