Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0311 ATGGCGCCGTCGCCGGCGGAACCGATCGGCGATTCTGGAACAGGAGATTCTCAGAGATCTATACCGACGCCGTTTCTAACGAAAACTTATCAATTGGTTGATGATCCGGCTGTGGACGATCTCATTTCGTGGAATGAAGATGGATCTACCTTCATAGTTTGGCGACCGGCTGAATTTGCTCGAGATTTACTTCCTAAATACTTTAAGCACAATAATTTCTCTAGTTTCGTCCGTCAACTTAACACTTACGGGTTCCGAAAGGTTGTGCCGGACCGATGGGAATTTGCGAACGATTGTTTCCGGAGAGGTGAGAAAGGACTTCTCCGAGACATTCAGCGGCGTAAAGTGGCGCTGTCGGTAACAACAACGCCGCCGGCGACTCCAGCTGCGGTGGCTGTGCCAGTGACGGTGGCGGCGTCTCCAGCAGTGTTGGCTCACGTGGTATCACCGGCGAACTCTGCAGAAGAGCAAGTTACGTCCTCGAACTCATCGCCCATGGCATTTCAGCGAAGTACGAGCTGCACCACGACGCCGGAACTTGTGAGAGAGAATGAGCGGTTAAGGAAGGAGAATATGCAACTGAGTCACGAGTTGACCCAGTTGAAAGGACTCTGTAACAGCATACTATCGCTGATGACGAATTACGCATCAGGTCACCATTACCAGTTGGAGTCGGTGAGCGTCCGAGACGGGAAGGCACTAGAGCTCTTACCGGCGAGGCAGGTGATGGAAGACGAAGGCGCCGTCAGCGACGGGGCTCATGAGGTGAGACTGAAGATGGAGGAGACGATGACAGCGGCAGCGGCAGCGGCGGCGGCAGGAATGACGCCGAAACTGTTCGGGGTATCGATCGGAGTGAAGCGGATGAGGAGAGAGGAAGAGGACGAGGAAGAGATGGTGGGGCAGAATCATGTACAGTCGGAAGAAGGGGAGACGGGGTCAGAGATCAAAGCTGAACCGTTGGATGAAAACTCTGAAAATCCAGAGGGATCCGCGTCGCCATGGCTTGAACTCGGAAATCAAGGCTCCTGA 1032 53.78 MAPSPAEPIGDSGTGDSQRSIPTPFLTKTYQLVDDPAVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKVALSVTTTPPATPAAVAVPVTVAASPAVLAHVVSPANSAEEQVTSSNSSPMAFQRSTSCTTTPELVRENERLRKENMQLSHELTQLKGLCNSILSLMTNYASGHHYQLESVSVRDGKALELLPARQVMEDEGAVSDGAHEVRLKMEETMTAAAAAAAAGMTPKLFGVSIGVKRMRREEEDEEEMVGQNHVQSEEGETGSEIKAEPLDENSENPEGSASPWLELGNQGS 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3023119 3024286 + CcPI632755_01g003110.1 Cco01g0311 169173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0311 343 MobiDBLite consensus disorder prediction 1 21 - -
Cco01g0311 343 MobiDBLite consensus disorder prediction 326 343 - -
Cco01g0311 343 FunFam Heat stress transcription factor B-4 17 115 - -
Cco01g0311 343 MobiDBLite consensus disorder prediction 290 324 - -
Cco01g0311 343 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco01g0311 343 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco01g0311 343 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco01g0311 343 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco01g0311 343 SUPERFAMILY Winged helix DNA-binding domain 22 114 IPR036390 -
Cco01g0311 343 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 298 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cco01g0311 343 SMART hsfneu3 21 114 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco01g0311 343 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco01g0311 343 MobiDBLite consensus disorder prediction 155 176 - -
Cco01g0311 343 Coils Coil 184 204 - -
Cco01g0311 343 Gene3D - 17 115 IPR036388 -
Cco01g0311 343 MobiDBLite consensus disorder prediction 290 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0311 K09419 - - csv:101203886 588.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0311 Cco-Chr1:3023119 Cco05g0957 Cco-Chr5:8378730 2.20E-59 dispersed
Cco01g0311 Cco-Chr1:3023119 Cco05g2263 Cco-Chr5:31351446 1.50E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g620 . Blo15g00160 . . . Bpe07g00947 . . Cmo16g00141 Cmo18g01259 . Cma15g01203 . Car15g01090 Sed01g3914 . Cpe14g00115 Bhi01g01343 Tan01g0269 Cmetu06g2712 Lac11g2126 Hepe07g0173 Mch10g0169 . Cla01g00293 Cam01g0304 Cec01g0295 Cco01g0311 Clacu01g0304 Cmu01g0289 . . . . . . Csa05g00316 Chy09g01192 Cme06g00981 . . Bda06g00674 . . . . Bma12g01125 . . Cmo15g01268 Cma16g00136 Cma18g01236 Car16g00120 Car18g01140 Cpe09g00100 Cpe13g00172 Bhi12g00210 . . Lac11g2126 Hepe06g1576 . Lcy12g1687 . . . . . . . . Csa03g01695 Chy06g00930 Cme09g01727
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0570 . 37 237 HSF AT4G17750 59.6 1.0e-62 238.0
Cco09g0706 . 89 330 HSF AT4G17750 51.0 3.1e-59 226.5
Cco08g1887 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cco03g0708 . 13 192 HSF AT4G17750 50.8 8.3e-44 175.3
Cco06g0947 . 12 172 HSF AT4G17750 50.3 1.9e-40 164.1
Cco08g1787 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cco05g2263 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cco01g0311 . 20 115 HSF AT4G17750 70.8 7.5e-37 152.1
Cco05g0570 . 38 242 HSF AT5G16820 57.5 5.6e-61 232.3
Cco07g0052 . 26 262 HSF AT5G16820 50.6 2.3e-59 226.9
Cco09g0706 . 90 302 HSF AT5G16820 54.0 4.1e-56 216.1
Cco08g1887 . 43 244 HSF AT5G16820 53.1 7.1e-56 215.3
Cco06g0947 . 8 176 HSF AT5G16820 51.6 1.5e-42 171.0
Cco04g2180 . 9 191 HSF AT5G16820 50.3 2.6e-42 170.2
Cco02g1950 . 13 188 HSF AT5G16820 50.3 2.9e-41 166.8
Cco10g0148 . 13 514 HSF AT1G32330 52.9 5.7e-122 434.9
Cco05g0570 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cco09g0706 . 78 298 HSF AT1G32330 51.3 1.7e-57 220.7
Cco07g0052 . 29 226 HSF AT1G32330 53.1 1.9e-56 217.2
Cco08g1887 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cco08g1787 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cco07g0052 . 41 262 HSF AT3G02990 52.6 3.8e-62 236.1
Cco05g0570 . 38 241 HSF AT3G02990 57.6 1.1e-61 234.6
Cco09g0706 . 90 313 HSF AT3G02990 52.4 1.1e-58 224.6
Cco08g1887 . 43 244 HSF AT3G02990 51.7 6.9e-56 215.3
Cco06g0947 . 9 172 HSF AT3G02990 50.5 1.3e-41 167.9
Cco05g0570 . 25 298 HSF AT2G26150 50.5 4.0e-69 258.8
Cco09g0706 . 78 297 HSF AT2G26150 54.3 3.0e-64 242.7
Cco10g0148 . 8 243 HSF AT2G26150 55.7 3.1e-61 232.6
Cco11g0193 . 28 247 HSF AT2G26150 50.7 2.2e-51 199.9
Cco10g1925 . 1115 1371 HSF AT5G03720 57.1 4.5e-75 278.9
Cco05g0358 . 6 462 HSF AT4G13980 51.5 1.3e-115 413.7
Cco02g1950 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cco05g0570 . 26 218 HSF AT5G43840 53.9 7.8e-55 211.1
Cco08g1887 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cco09g0706 . 78 415 HSF AT3G22830 53.3 1.3e-90 330.5
Cco05g0570 . 22 338 HSF AT3G22830 52.2 2.4e-89 326.2
Cco07g0052 . 27 347 HSF AT3G22830 51.8 2.5e-86 316.2
Cco08g1887 . 31 253 HSF AT3G22830 54.5 3.2e-65 246.1
Cco10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cco09g0706 . 77 390 HSF AT3G51910 50.8 4.4e-71 265.0
Cco07g0052 . 29 322 HSF AT3G51910 52.3 5.4e-69 258.1
Cco08g1887 . 31 223 HSF AT3G51910 56.5 1.7e-54 209.9
Cco07g0052 . 29 321 HSF AT3G63350 50.3 7.5e-66 247.7
Cco08g1887 . 31 230 HSF AT3G63350 53.0 1.2e-50 197.2
Cco02g1950 . 5 140 HSF AT3G63350 56.6 3.0e-38 156.0
Cco04g1439 . 2 296 HSF AT4G36990 52.0 7.1e-72 267.7
Cco05g0957 . 599 706 HSF AT4G36990 64.8 2.3e-38 156.4
Cco08g1787 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cco01g0311 . 16 339 HSF AT4G11660 51.2 4.7e-79 292.0
Cco08g1787 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cco04g1439 . 2 107 HSF AT4G11660 71.7 3.5e-42 169.5
Cco03g1271 . 20 119 HSF AT4G11660 69.0 4.7e-39 159.1
Cco10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cco10g1566 . 24 222 HSF AT2G41690 55.7 2.5e-49 192.6
Cco04g0481 . 7 214 HSF AT2G41690 50.6 1.6e-48 189.9
Cco08g1787 . 9 373 HSF AT1G46264 51.9 8.6e-88 320.9
Cco05g2263 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cco03g1271 . 19 200 HSF AT1G46264 53.3 3.1e-53 206.1
Cco10g0148 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cco02g1950 . 5 115 HSF AT1G46264 63.1 4.1e-37 152.5
Cco10g1566 . 21 118 HSF AT1G46264 69.4 5.3e-37 152.1
Cco11g0267 . 10 181 HSF AT3G24520 64.0 7.7e-62 234.6
Cco05g0570 . 37 237 HSF AT4G17750 59.6 1.0e-62 238.0
Cco09g0706 . 89 330 HSF AT4G17750 51.0 3.1e-59 226.5
Cco08g1887 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cco03g0708 . 13 192 HSF AT4G17750 50.8 8.3e-44 175.3
Cco06g0947 . 12 172 HSF AT4G17750 50.3 1.9e-40 164.1
Cco08g1787 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cco05g2263 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cco01g0311 . 20 115 HSF AT4G17750 70.8 7.5e-37 152.1
Cco05g0570 . 38 242 HSF AT5G16820 57.5 5.6e-61 232.3
Cco07g0052 . 26 262 HSF AT5G16820 50.6 2.3e-59 226.9
Cco09g0706 . 90 302 HSF AT5G16820 54.0 4.1e-56 216.1
Cco08g1887 . 43 244 HSF AT5G16820 53.1 7.1e-56 215.3
Cco06g0947 . 8 176 HSF AT5G16820 51.6 1.5e-42 171.0
Cco04g2180 . 9 191 HSF AT5G16820 50.3 2.6e-42 170.2
Cco02g1950 . 13 188 HSF AT5G16820 50.3 2.9e-41 166.8
Cco10g0148 . 13 514 HSF AT1G32330 52.9 5.7e-122 434.9
Cco05g0570 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cco09g0706 . 78 298 HSF AT1G32330 51.3 1.7e-57 220.7
Cco07g0052 . 29 226 HSF AT1G32330 53.1 1.9e-56 217.2
Cco08g1887 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cco08g1787 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cco07g0052 . 41 262 HSF AT3G02990 52.6 3.8e-62 236.1
Cco05g0570 . 38 241 HSF AT3G02990 57.6 1.1e-61 234.6
Cco09g0706 . 90 313 HSF AT3G02990 52.4 1.1e-58 224.6
Cco08g1887 . 43 244 HSF AT3G02990 51.7 6.9e-56 215.3
Cco06g0947 . 9 172 HSF AT3G02990 50.5 1.3e-41 167.9
Cco05g0570 . 25 298 HSF AT2G26150 50.5 4.0e-69 258.8
Cco09g0706 . 78 297 HSF AT2G26150 54.3 3.0e-64 242.7
Cco10g0148 . 8 243 HSF AT2G26150 55.7 3.1e-61 232.6
Cco11g0193 . 28 247 HSF AT2G26150 50.7 2.2e-51 199.9
Cco10g1925 . 1115 1371 HSF AT5G03720 57.1 4.5e-75 278.9
Cco05g0358 . 6 462 HSF AT4G13980 51.5 1.3e-115 413.7
Cco02g1950 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cco05g0570 . 26 218 HSF AT5G43840 53.9 7.8e-55 211.1
Cco08g1887 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cco09g0706 . 78 415 HSF AT3G22830 53.3 1.3e-90 330.5
Cco05g0570 . 22 338 HSF AT3G22830 52.2 2.4e-89 326.2
Cco07g0052 . 27 347 HSF AT3G22830 51.8 2.5e-86 316.2
Cco08g1887 . 31 253 HSF AT3G22830 54.5 3.2e-65 246.1
Cco10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cco09g0706 . 77 390 HSF AT3G51910 50.8 4.4e-71 265.0
Cco07g0052 . 29 322 HSF AT3G51910 52.3 5.4e-69 258.1
Cco08g1887 . 31 223 HSF AT3G51910 56.5 1.7e-54 209.9
Cco07g0052 . 29 321 HSF AT3G63350 50.3 7.5e-66 247.7
Cco08g1887 . 31 230 HSF AT3G63350 53.0 1.2e-50 197.2
Cco02g1950 . 5 140 HSF AT3G63350 56.6 3.0e-38 156.0
Cco04g1439 . 2 296 HSF AT4G36990 52.0 7.1e-72 267.7
Cco05g0957 . 599 706 HSF AT4G36990 64.8 2.3e-38 156.4
Cco08g1787 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cco01g0311 . 16 339 HSF AT4G11660 51.2 4.7e-79 292.0
Cco08g1787 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cco04g1439 . 2 107 HSF AT4G11660 71.7 3.5e-42 169.5
Cco03g1271 . 20 119 HSF AT4G11660 69.0 4.7e-39 159.1
Cco10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cco10g1566 . 24 222 HSF AT2G41690 55.7 2.5e-49 192.6
Cco04g0481 . 7 214 HSF AT2G41690 50.6 1.6e-48 189.9
Cco08g1787 . 9 373 HSF AT1G46264 51.9 8.6e-88 320.9
Cco05g2263 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cco03g1271 . 19 200 HSF AT1G46264 53.3 3.1e-53 206.1
Cco10g0148 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cco02g1950 . 5 115 HSF AT1G46264 63.1 4.1e-37 152.5
Cco10g1566 . 21 118 HSF AT1G46264 69.4 5.3e-37 152.1
Cco11g0267 . 10 181 HSF AT3G24520 64.0 7.7e-62 234.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004116 2 2 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58558 PF00447 HSF_DNA-bind 3.20E-32 CL0123 Cco TF