Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0320 | ATGGCTGACCAAAAGCTTCAAATTAATGAAAGCCAAATAGACCAATCTCTTCATCCTCCTCCTCCAATATCTAAACCAATTGTCATTGACCCTTCTGTTTCTTCTGTCCCCACATCCCAAAATCCAAATCCTAAGTCACAAGAGGGTGAAGGTGAACAAAAACAACCTAATTTGCATCAACAACTCCCACCAGTACCTCCTTCATCTTCCATGGCTTCTTCTTCAACTAAGAAGCATTCTTTGTATAGAGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCCGAGATACGCGAGCCACGTAAGACAACACGCATATGGCTCGGCACGTTTCCGACTGCAGAGATGGCTGCTGCCGCTTATGATGTTGCTGCCCTTGCCCTCAAAGGCGGCGATGCGGTTCTTAACTTCCCTTCCTCCATTCCCACCTACCCTGTTCCCGCGTCGACTTCTCCGGTCGATATTCGCACAGCTGCCTCCACTGCCGCTGCTGCTACCGCCACTAATGCATTGAAGAAAGCTGCGTCATCGACTTCCCCGGTTGACGTTTGCACTATGGATGATAGTAGCAATACGACGATGGGAATGGAGGAGTTTGTGGATGAAGAAGAAATTTTTGGGATGCCGGGTTTGTTGGCGGACATGGCGGAGGGGATGATGGTGTCCCCGCCGAGAATAAACTCGCCACCACTTTCCGATGACTCGATGGAAAATTCTGATGGAACGGAAAGTTTATGGAGCTTCTTTTGA | 747 | 49.4 | MADQKLQINESQIDQSLHPPPPISKPIVIDPSVSSVPTSQNPNPKSQEGEGEQKQPNLHQQLPPVPPSSSMASSSTKKHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALKGGDAVLNFPSSIPTYPVPASTSPVDIRTAASTAAAATATNALKKAASSTSPVDVCTMDDSSNTTMGMEEFVDEEEIFGMPGLLADMAEGMMVSPPRINSPPLSDDSMENSDGTESLWSFF | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3106950 | 3107696 | + | CcPI632755_01g003200.1 | Cco01g0320 | 169182 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0320 | 248 | CDD | AP2 | 80 | 139 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0320 | 248 | Gene3D | AP2/ERF domain | 81 | 139 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0320 | 248 | MobiDBLite | consensus disorder prediction | 226 | 248 | - | - | |
Cco01g0320 | 248 | FunFam | Ethylene-responsive transcription factor 2 | 80 | 138 | - | - | |
Cco01g0320 | 248 | MobiDBLite | consensus disorder prediction | 31 | 80 | - | - | |
Cco01g0320 | 248 | SUPERFAMILY | DNA-binding domain | 80 | 139 | IPR016177 | GO:0003677(InterPro) | |
Cco01g0320 | 248 | ProSiteProfiles | AP2/ERF domain profile. | 81 | 137 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0320 | 248 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cco01g0320 | 248 | MobiDBLite | consensus disorder prediction | 1 | 82 | - | - | |
Cco01g0320 | 248 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 44 | 247 | IPR045277 | GO:0003700(InterPro) | |
Cco01g0320 | 248 | MobiDBLite | consensus disorder prediction | 227 | 248 | - | - | |
Cco01g0320 | 248 | Pfam | AP2 domain | 81 | 129 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0320 | 248 | SMART | rav1_2 | 81 | 145 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0320 | Cco-Chr1:3106950 | Cco05g0939 | Cco-Chr5:8206236 | 8.10E-40 | dispersed | |
Cco01g0320 | Cco-Chr1:3106950 | Cco01g0321 | Cco-Chr1:3140559 | 4.20E-28 | tandem | |
Cco10g0374 | Cco-Chr10:4367754 | Cco01g0320 | Cco-Chr1:3106950 | 4.10E-51 | transposed | |
Cco01g0320 | Cco-Chr1:3106950 | Cco05g0938 | Cco-Chr5:8185884 | 4.00E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58559 | PF00847 | AP2 | 2.40E-10 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0320 | - | - | - | 0.0 |