Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0320 ATGGCTGACCAAAAGCTTCAAATTAATGAAAGCCAAATAGACCAATCTCTTCATCCTCCTCCTCCAATATCTAAACCAATTGTCATTGACCCTTCTGTTTCTTCTGTCCCCACATCCCAAAATCCAAATCCTAAGTCACAAGAGGGTGAAGGTGAACAAAAACAACCTAATTTGCATCAACAACTCCCACCAGTACCTCCTTCATCTTCCATGGCTTCTTCTTCAACTAAGAAGCATTCTTTGTATAGAGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCCGAGATACGCGAGCCACGTAAGACAACACGCATATGGCTCGGCACGTTTCCGACTGCAGAGATGGCTGCTGCCGCTTATGATGTTGCTGCCCTTGCCCTCAAAGGCGGCGATGCGGTTCTTAACTTCCCTTCCTCCATTCCCACCTACCCTGTTCCCGCGTCGACTTCTCCGGTCGATATTCGCACAGCTGCCTCCACTGCCGCTGCTGCTACCGCCACTAATGCATTGAAGAAAGCTGCGTCATCGACTTCCCCGGTTGACGTTTGCACTATGGATGATAGTAGCAATACGACGATGGGAATGGAGGAGTTTGTGGATGAAGAAGAAATTTTTGGGATGCCGGGTTTGTTGGCGGACATGGCGGAGGGGATGATGGTGTCCCCGCCGAGAATAAACTCGCCACCACTTTCCGATGACTCGATGGAAAATTCTGATGGAACGGAAAGTTTATGGAGCTTCTTTTGA 747 49.4 MADQKLQINESQIDQSLHPPPPISKPIVIDPSVSSVPTSQNPNPKSQEGEGEQKQPNLHQQLPPVPPSSSMASSSTKKHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALKGGDAVLNFPSSIPTYPVPASTSPVDIRTAASTAAAATATNALKKAASSTSPVDVCTMDDSSNTTMGMEEFVDEEEIFGMPGLLADMAEGMMVSPPRINSPPLSDDSMENSDGTESLWSFF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3106950 3107696 + CcPI632755_01g003200.1 Cco01g0320 169182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0320 248 CDD AP2 80 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0320 248 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0320 248 MobiDBLite consensus disorder prediction 226 248 - -
Cco01g0320 248 FunFam Ethylene-responsive transcription factor 2 80 138 - -
Cco01g0320 248 MobiDBLite consensus disorder prediction 31 80 - -
Cco01g0320 248 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677(InterPro)
Cco01g0320 248 ProSiteProfiles AP2/ERF domain profile. 81 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0320 248 MobiDBLite consensus disorder prediction 1 18 - -
Cco01g0320 248 MobiDBLite consensus disorder prediction 1 82 - -
Cco01g0320 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 44 247 IPR045277 GO:0003700(InterPro)
Cco01g0320 248 MobiDBLite consensus disorder prediction 227 248 - -
Cco01g0320 248 Pfam AP2 domain 81 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0320 248 SMART rav1_2 81 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0320 Cco-Chr1:3106950 Cco05g0939 Cco-Chr5:8206236 8.10E-40 dispersed
Cco01g0320 Cco-Chr1:3106950 Cco01g0321 Cco-Chr1:3140559 4.20E-28 tandem
Cco10g0374 Cco-Chr10:4367754 Cco01g0320 Cco-Chr1:3106950 4.10E-51 transposed
Cco01g0320 Cco-Chr1:3106950 Cco05g0938 Cco-Chr5:8185884 4.00E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58559 PF00847 AP2 2.40E-10 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0320 - - - 0.0