Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0321 ATGGATTGGTTCGCTCAATTTTCTGACCCTCTTCCTTATTATGCTAATTGTAGTTACAAATCGGAATCCTCTTCCACGTTTTCAGACGCCGGAACACCTCCTCATACGGTCGCTAACTCCGACGAAGAAGTGATTCTGGCGTCCAACCGCCCAAAGCGGCGGGCCGGTCGCCGGGTTTTTAAAGAAACCAGACATCCGGTTTACAGAGGAGTACGCCGGAGGAATAACGACAAATGGGTTTGTGAGCTGAGGGAGCCAAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGCGGAGATGGCGGCGCGTGCGCACGATGTAGCGGCACTCGCGTTGAGAGGAAAATCGGCTTGTCTCAATTTCGCTGACTCTGCTTGGCGGTTCCCAATTCCGGCGACTGATGACCCGTCTGTGATCAGGGAGGCGGCGGCGAGGGCGGCGAATGAGTGTAAGGATGAGGAATGTAATGTGGGTCGGGAAGAGGACGACGGCGTTTCGGGTCAGGCGACGGCGGATCCTGACCGACCGGATTATGTCGACGATGAGGCTTTGTCGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGACTTCTTCTTTCTCCTCCATCTTTTTGTGTCAATGATGACGTGGAGTGGGATGATGTGGCAATGAATGATGATGTGTCATTGTGGAGCTTTTAG 690 53.33 MDWFAQFSDPLPYYANCSYKSESSSTFSDAGTPPHTVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCELREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPATDDPSVIREAAARAANECKDEECNVGREEDDGVSGQATADPDRPDYVDDEALSNMPMLLASMAEGLLLSPPSFCVNDDVEWDDVAMNDDVSLWSF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3140559 3141248 + CcPI632755_01g003210.1 Cco01g0321 169183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0321 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 23 229 IPR045277 GO:0003700(InterPro)
Cco01g0321 229 FunFam Ethylene-responsive transcription factor 2 66 125 - -
Cco01g0321 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0321 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0321 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0321 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0321 229 SMART rav1_2 67 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0321 229 CDD AP2 68 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0321 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0321 229 MobiDBLite consensus disorder prediction 159 178 - -
Cco01g0321 229 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0321 Cco-Chr1:3140559 Cco01g0592 Cco-Chr1:5879444 1.70E-55 dispersed
Cco01g0320 Cco-Chr1:3106950 Cco01g0321 Cco-Chr1:3140559 4.20E-28 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58560 PF00847 AP2 1.60E-14 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0321 - - - 0.0