Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0321 | ATGGATTGGTTCGCTCAATTTTCTGACCCTCTTCCTTATTATGCTAATTGTAGTTACAAATCGGAATCCTCTTCCACGTTTTCAGACGCCGGAACACCTCCTCATACGGTCGCTAACTCCGACGAAGAAGTGATTCTGGCGTCCAACCGCCCAAAGCGGCGGGCCGGTCGCCGGGTTTTTAAAGAAACCAGACATCCGGTTTACAGAGGAGTACGCCGGAGGAATAACGACAAATGGGTTTGTGAGCTGAGGGAGCCAAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGCGGAGATGGCGGCGCGTGCGCACGATGTAGCGGCACTCGCGTTGAGAGGAAAATCGGCTTGTCTCAATTTCGCTGACTCTGCTTGGCGGTTCCCAATTCCGGCGACTGATGACCCGTCTGTGATCAGGGAGGCGGCGGCGAGGGCGGCGAATGAGTGTAAGGATGAGGAATGTAATGTGGGTCGGGAAGAGGACGACGGCGTTTCGGGTCAGGCGACGGCGGATCCTGACCGACCGGATTATGTCGACGATGAGGCTTTGTCGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGACTTCTTCTTTCTCCTCCATCTTTTTGTGTCAATGATGACGTGGAGTGGGATGATGTGGCAATGAATGATGATGTGTCATTGTGGAGCTTTTAG | 690 | 53.33 | MDWFAQFSDPLPYYANCSYKSESSSTFSDAGTPPHTVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCELREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPATDDPSVIREAAARAANECKDEECNVGREEDDGVSGQATADPDRPDYVDDEALSNMPMLLASMAEGLLLSPPSFCVNDDVEWDDVAMNDDVSLWSF | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3140559 | 3141248 | + | CcPI632755_01g003210.1 | Cco01g0321 | 169183 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0321 | 229 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 23 | 229 | IPR045277 | GO:0003700(InterPro) | |
Cco01g0321 | 229 | FunFam | Ethylene-responsive transcription factor 2 | 66 | 125 | - | - | |
Cco01g0321 | 229 | ProSiteProfiles | AP2/ERF domain profile. | 67 | 124 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0321 | 229 | Pfam | AP2 domain | 66 | 116 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0321 | 229 | PRINTS | Ethylene responsive element binding protein signature | 90 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0321 | 229 | PRINTS | Ethylene responsive element binding protein signature | 68 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0321 | 229 | SMART | rav1_2 | 67 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0321 | 229 | CDD | AP2 | 68 | 126 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0321 | 229 | Gene3D | AP2/ERF domain | 67 | 125 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0321 | 229 | MobiDBLite | consensus disorder prediction | 159 | 178 | - | - | |
Cco01g0321 | 229 | SUPERFAMILY | DNA-binding domain | 67 | 126 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0321 | Cco-Chr1:3140559 | Cco01g0592 | Cco-Chr1:5879444 | 1.70E-55 | dispersed | |
Cco01g0320 | Cco-Chr1:3106950 | Cco01g0321 | Cco-Chr1:3140559 | 4.20E-28 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58560 | PF00847 | AP2 | 1.60E-14 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0321 | - | - | - | 0.0 |