Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0322 ATGGCTTCCGCTGATTTTTCTAATTGGACTCTCATATCAAAGCCTCCGCCTGAAAAACCTAAGTCCTTCATGCTCAAGGATTATCTTCTTGACGATATTAGCTCTTGCTCCTCCAATGGCTTCCAGTCATTTCCACGCCGCCAATGCTGCACCACAACCGTCCGATTTCTCCTCGAAATCGATCTCAAAGTGAAAGATACTTCGGTAACTAAAAGATTCCTTCCTCGAACAACCTCCAGAAAATTCGCTCTCTCCACCATCTCCACTTTGCAAAAAGCCTCCGACGCTGTTCTCAGAGCCTTCAAGCAATTTCCCTTACCTTCTTCACGGAAATCGTTTTTTCCGAGGAGTATTTCACGGAAGCTGATTCTGAAAGCGTTCTGGAAAAAATCGGATATCGTCGATCCAAACACTAGACGGTGGAAATCGTTTCAGGAGTTTCTCGACGAGAAAGAACCGCCGTCGTCTGCCGTCGCTGGAAGAAACTCGATCAGCAGTTGTAGTAATAGTATCAGTTGGACGGAGAGTGAATTTACATCAGAGATGATTCCGTCGTCTTCGAGCGGTAATTCCGGGAGTTGCAGCGAAAACGACGCCGTCAAGGACGATCAGAATTCACCTGGTAATCTCATTGGCAAAAGAGATGGCGTAACGTTCGGAAAAGATTCCACGGAGGTGACAACTACCGCCCCGGCCGCCGCCGCCACCGGTTACCGGGAGGATATCGTTAAGCAATGGCAAAATGAAGAAGAAAAAGAACAATCCAGTCCAATTTCAGTGTTGGATTTTCCATTCGAAGATGAAGATCAAGACGTTTCCCCGTCCTTCAACTGCAACATTCACCTTGTCGAAGGTAAGAAGCAAAAGCATAGAGAGAAGACGAAGCGATTGGAGAAGGCAATTGAATTGGAGCCTGTAGACTTAAAGAAAAGATTCACAGACAGAAGTGTTATTGGTCAAGATTTCAGTTTAATTACTAAAAAAGAACATCAAATGGAAGAGAAGGCTTTTGAGCTTCTAAAGCTTCTCAAATCTACAACCAAATCAACAGAGAATCTGCTTCTCGATTTCTTCCACCAGAAGCTCGAAGAACACGAAGCAACTCCAACTAATTCAGATTTTGATCACACACAGCTTTTGAAATTCACCCAAGATTGGATCAATGGAGAAGCCGGAGAAATGATGGTAATGGGATGGGAATCGCCGGAAGAACGGAATTTTTACATTCAAGATATGGAAGTCGCCGGAAAGTGGGGAAGTTTCGCGGGAGAAAAGGAGGAGTTAGCCGCGGAGTTTGAAGCCGAGGGTTTGTTCATATGGATCTCAAGCCAGCTAATTCTCGCATTCCCACAAAGTTCTGGTGGCAAGATGAAGTTGAAGATTGTTGACTTTGGACTTTCCAAGAGATATGAGAAAAGGGATGATGAGGAGGGAGTGGTTTTCGGTCTGCCAAAGTTTAGAGGAACGCCGAAATATATGTCGCCCGAATCGATTGTTTTAATGGAGGCCAACAATGCATTTGATATTTGGTCATTAGGTTGCATTTTGGTTAAAATGGTTTCGGGAGAAAATCTGTGTGGAATGATTGCAAAAGTCACCAAGAGTTGA 1608 44.4 MASADFSNWTLISKPPPEKPKSFMLKDYLLDDISSCSSNGFQSFPRRQCCTTTVRFLLEIDLKVKDTSVTKRFLPRTTSRKFALSTISTLQKASDAVLRAFKQFPLPSSRKSFFPRSISRKLILKAFWKKSDIVDPNTRRWKSFQEFLDEKEPPSSAVAGRNSISSCSNSISWTESEFTSEMIPSSSSGNSGSCSENDAVKDDQNSPGNLIGKRDGVTFGKDSTEVTTTAPAAAATGYREDIVKQWQNEEEKEQSSPISVLDFPFEDEDQDVSPSFNCNIHLVEGKKQKHREKTKRLEKAIELEPVDLKKRFTDRSVIGQDFSLITKKEHQMEEKAFELLKLLKSTTKSTENLLLDFFHQKLEEHEATPTNSDFDHTQLLKFTQDWINGEAGEMMVMGWESPEERNFYIQDMEVAGKWGSFAGEKEELAAEFEAEGLFIWISSQLILAFPQSSGGKMKLKIVDFGLSKRYEKRDDEEGVVFGLPKFRGTPKYMSPESIVLMEANNAFDIWSLGCILVKMVSGENLCGMIAKVTKS 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3152528 3159720 + CcPI632755_01g003220.1 Cco01g0322 169184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0322 535 Gene3D Transferase(Phosphotransferase) domain 1 440 533 - -
Cco01g0322 535 MobiDBLite consensus disorder prediction 178 204 - -
Cco01g0322 535 PANTHER OS04G0572500 PROTEIN 17 435 - -
Cco01g0322 535 SUPERFAMILY Protein kinase-like (PK-like) 452 525 IPR011009 -
Cco01g0322 535 ProSiteProfiles Protein kinase domain profile. 312 535 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0322 535 Pfam Protein kinase domain 457 527 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0322 535 MobiDBLite consensus disorder prediction 178 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0322 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0322 Cco-Chr1:3152528 Cco04g0286 Cco-Chr4:8477729 3.70E-21 dispersed
Cco01g0322 Cco-Chr1:3152528 Cco04g0284 Cco-Chr4:8445191 3.70E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g404 . . . . . . . Bma14g00581 . . Cma02g01487 Cma15g01196 Car02g01245 Car15g01084 . . Cpe05g00304 . . . . . . . . . . . . . . Cone8ag0331 Cone12ag0328 . . . Csa05g00326 Chy09g01183 . Blo03g00374 . Bda07g00498 . . Bpe11g00687 . . . Cmo02g01525 Cmo15g01260 . . . . . Cpe13g00178 Bhi12g00201 . . . . . Lcy12g1705 Cla01g00303 Cam01g0315 . Cco01g0322 Clacu01g0315 Cmu01g0300 Cre09g2208 Lsi09g00311 . . Cme09g01716
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008294 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86496 PF00069 Pkinase 2.70E-14 CL0016 Cco PK