Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0332 | ATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCCGGTGGGTCCACTGGTGCCTTAAGCGGTGACGTTTCGGTTTCGGGTGACGGAGTTCATAACAGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCCATTGATCAGCTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATGTTTTGCGTTCTTATGCTTCTCAGCAGCATCACCCAAATGCTCATTCCTTAACGCCTCATGAGCGCCAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTCTTGTGCTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCCTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACCGGTGCAACGATGTCGGATGACGAGGACGACATTCCAATGGACTTTTCGCTGGATCAATCCGGCACCGATGCACATGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCCGAAAGATCATTGATGGAGAGGGTCCGGCAAGAACTGAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCTGGGAAGTTACCTGGGGATACAACTACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGACGATAAGGCGAAGCTGGTGGAGGAGACAGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCCTTGAAGTCCAAGCGCAAGAGATAA | 903 | 47.95 | MQEPGLGMMTAAGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3249957 | 3253159 | - | CcPI632755_01g003320.1 | Cco01g0332 | 169194 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0332 | 300 | ProSiteProfiles | 'Homeobox' domain profile. | 223 | 286 | IPR001356 | GO:0003677(InterPro) | |
Cco01g0332 | 300 | SUPERFAMILY | Homeodomain-like | 225 | 290 | IPR009057 | - | |
Cco01g0332 | 300 | ProSiteProfiles | ELK domain profile. | 203 | 223 | IPR005539 | GO:0003677(InterPro) | |
Cco01g0332 | 300 | Gene3D | - | 222 | 296 | - | - | |
Cco01g0332 | 300 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 224 | 285 | - | - | |
Cco01g0332 | 300 | CDD | homeodomain | 226 | 287 | IPR001356 | GO:0003677(InterPro) | |
Cco01g0332 | 300 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 35 | 286 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco01g0332 | 300 | SMART | KNOX1_2 | 33 | 77 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco01g0332 | 300 | Pfam | KNOX2 domain | 96 | 146 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco01g0332 | 300 | SMART | KNOX2_2 | 92 | 147 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco01g0332 | 300 | SMART | HOX_1 | 225 | 290 | IPR001356 | GO:0003677(InterPro) | |
Cco01g0332 | 300 | Pfam | KNOX1 domain | 35 | 76 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco01g0332 | 300 | Pfam | Homeobox KN domain | 243 | 282 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0332 | Cco-Chr1:3249957 | Cco08g1527 | Cco-Chr8:26915636 | 9.60E-104 | dispersed | |
Cco01g0332 | Cco-Chr1:3249957 | Cco05g1891 | Cco-Chr5:27967000 | 3.00E-105 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58561 | PF03791 | KNOX2 | 7.60E-18 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0332 | - | - | - | 0.0 |