Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0332 ATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCCGGTGGGTCCACTGGTGCCTTAAGCGGTGACGTTTCGGTTTCGGGTGACGGAGTTCATAACAGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCCATTGATCAGCTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATGTTTTGCGTTCTTATGCTTCTCAGCAGCATCACCCAAATGCTCATTCCTTAACGCCTCATGAGCGCCAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTCTTGTGCTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCCTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACCGGTGCAACGATGTCGGATGACGAGGACGACATTCCAATGGACTTTTCGCTGGATCAATCCGGCACCGATGCACATGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCCGAAAGATCATTGATGGAGAGGGTCCGGCAAGAACTGAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCTGGGAAGTTACCTGGGGATACAACTACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGACGATAAGGCGAAGCTGGTGGAGGAGACAGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCCTTGAAGTCCAAGCGCAAGAGATAA 903 47.95 MQEPGLGMMTAAGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3249957 3253159 - CcPI632755_01g003320.1 Cco01g0332 169194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0332 300 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677(InterPro)
Cco01g0332 300 SUPERFAMILY Homeodomain-like 225 290 IPR009057 -
Cco01g0332 300 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677(InterPro)
Cco01g0332 300 Gene3D - 222 296 - -
Cco01g0332 300 FunFam homeobox protein knotted-1-like 3 isoform X1 224 285 - -
Cco01g0332 300 CDD homeodomain 226 287 IPR001356 GO:0003677(InterPro)
Cco01g0332 300 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 286 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco01g0332 300 SMART KNOX1_2 33 77 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco01g0332 300 Pfam KNOX2 domain 96 146 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco01g0332 300 SMART KNOX2_2 92 147 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco01g0332 300 SMART HOX_1 225 290 IPR001356 GO:0003677(InterPro)
Cco01g0332 300 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco01g0332 300 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0332 Cco-Chr1:3249957 Cco08g1527 Cco-Chr8:26915636 9.60E-104 dispersed
Cco01g0332 Cco-Chr1:3249957 Cco05g1891 Cco-Chr5:27967000 3.00E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58561 PF03791 KNOX2 7.60E-18 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0332 - - - 0.0