Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0344 ATGGCTGCCTCCCTTTCTCCCATTTATAACTTCCTCTTTGGTGAGTTCACCAACAGCATCAAGCCTCAGCCTTTTCCCTTAAACATGGTTCTTTTGCCTTCTCTTTTTCTCCTTCTCCTACTCAACTTCCACGGCTATGAGGCTCTAGTAGCTGAGTTTCCATTGAGCAATCTTCATACTTACATTGTCCATGTGAACAAACCAGAGACAGTTGATGATCTTGAGAGCTGGCATAGGTCATTCTTACCGACGAGTATGGAGAACTCGGAGGAGCAACCAATGTTGATGTATTCGTACCGAAATGTGATGAGTGGTTTTGCTGCAAGACTTACTGAAGAACAAGCGAAAGCAATGGAAGGGAAGGATGGTTTTGTGTCAGCTAGGCGTGAAAAGATATTGCATTTGCATACAACTCAAACCCCTGATTTTCTAGGATTGAATCGTCAATTTGGGTTTTGGAAAGATTCAAACTTTGGAAAGGGCGTGATCATAGGAGTATTAGATGGTGGAATTACACCAAACCATCCTTCATTTGATGATGTGGGAATGCCTCAACCGCCAGCCAAATGGAAAGGGAGATGTGAGTTTAATTTCTCTGCTTGTAACAACAAGCTTATAGGTGCAAGATCTTTTAATCTCGCATCAAAAGCCTTAAAGGGGAAGATAACACCAATGGATGACTCTCCTATTGATGAAGATGGCCATGGAACTCACACGGCAAGCACTGCTGCCGGTACTTTCGTCGAGGGTGCCGAGGCATTAGGAAACGCTGTAGGTACCGCCGTTGGGATGGCACCTTTAGCTCACCTCGCCATTTACAAAGTTTGCTTTGGAGAAGATTGCCCTGATACCGACATTCTCGCTGCACTCGATGCTGCTGTTGAGGATGGTGTTGACGTCCTCTCACTCTCGCTCGGGAGCCCACCGGCACCATTCTTTGCCGACAATATAGCCATAGGCACATTCGCAGCGATTCAAAAGGGGATTTTTGTAAGTTGCTCAGCTGCTAATTCAGGTCCTTTTAACGCCACATTGTCCAACGAAGCTCCATGGATTTTAACAGTTGCAGCTAGCACAATTGATCGAAGAATCATAGCTGCTACAAAGCTCGGAAACGGAGAAGAATTTGACGGCGAATCTCTGTTCCAGCCAAATGATTTCCCACAAACATTCTTGCCACTTGTTTTCCCTGGTGAGAAGAATGAAACGGTTGCATTATGTGGAGAAGGATCATTGAAAAACATTGATGTAAAAGGAAAAGTTGTGGTATGCGAGAGAGGAGGAGGAATTGCAAGAATTGCAAAAGGGGTAGAAGTAAAAAATGCAGGAGGTGCCGCCATGATCCTTCTCAACATAGAATCAGATGGCTTCACTACTGAAGCAGATGCTCATGTTCTTCCAGCAAGCCACGTTAGCCACACGGCGGCCCTGAAAATCAAAGCCTACATAAACTCAACAACATACCCAACAGCCACAATTGTATTCAAAGGAACCATAATTGGCGATGATTTCTCTCCAGCCATAGCTTCTTTCTCATCTCGAGGTCCCAGCGTCGCAAGCCCCGGCATCTTGAAACCGGATATAACTGGTCCCGGTGTCAGCATTTTAGCAGCATGGCCATTCCCATTAGACAACAACACAAACACAAAGTCAACATTCAACATAATTTCAGGAACATCCATGTCTTGTCCTCATCTCAGTGGCATTGCAGCTCTGATCAAAAGCTCTCATCCTGATTGGTCACCGGCCGTCATTAAATCCGCTATAATGACGACCGCTAACATAACAAACCTTGAAGGCAACCCAATTCTTGATCAAACTCTGCAGCCGGCGGATTTGTTTGCAATTGGCGCAGGTCATGTAAACCCATCAAAAGCAACTGACCCAGGATTGGTTTATGACATTCAACCTGATGATTATATTCCTTATCTTTGTGGATTAGGATACAAAAACAACCAAGTTTCACTTATTGCTCATAAACCAAGTGATTGTTTAACAACACCAAGCATTCCAGAAGGAGAACTCAACTACCCATCATTTGCGGTCGAATTAGGACCGCCGCAAACATTCACAAGAACGGTTACTAATGTTGGCGGTGGACGTGAAGTTTATACCGTCGTCATTGAAGCACCGGTGGCGGTTTCTATAACAGTCCAACCAAGGACGTTGACTTTCTCGACCTTGAACCAAAAAGCAACGTATTCAGTGACGTTTAAGAGAATTGGTTCGATTAGTCCCTCGATTGAGTTTGCTAAAGGCTATATCAAATGGGTCTCTGATAAACATGATGTTAGAAGTCCGATATCTGTTAAGTTTGTATGA 2322 44.36 MAASLSPIYNFLFGEFTNSIKPQPFPLNMVLLPSLFLLLLLNFHGYEALVAEFPLSNLHTYIVHVNKPETVDDLESWHRSFLPTSMENSEEQPMLMYSYRNVMSGFAARLTEEQAKAMEGKDGFVSARREKILHLHTTQTPDFLGLNRQFGFWKDSNFGKGVIIGVLDGGITPNHPSFDDVGMPQPPAKWKGRCEFNFSACNNKLIGARSFNLASKALKGKITPMDDSPIDEDGHGTHTASTAAGTFVEGAEALGNAVGTAVGMAPLAHLAIYKVCFGEDCPDTDILAALDAAVEDGVDVLSLSLGSPPAPFFADNIAIGTFAAIQKGIFVSCSAANSGPFNATLSNEAPWILTVAASTIDRRIIAATKLGNGEEFDGESLFQPNDFPQTFLPLVFPGEKNETVALCGEGSLKNIDVKGKVVVCERGGGIARIAKGVEVKNAGGAAMILLNIESDGFTTEADAHVLPASHVSHTAALKIKAYINSTTYPTATIVFKGTIIGDDFSPAIASFSSRGPSVASPGILKPDITGPGVSILAAWPFPLDNNTNTKSTFNIISGTSMSCPHLSGIAALIKSSHPDWSPAVIKSAIMTTANITNLEGNPILDQTLQPADLFAIGAGHVNPSKATDPGLVYDIQPDDYIPYLCGLGYKNNQVSLIAHKPSDCLTTPSIPEGELNYPSFAVELGPPQTFTRTVTNVGGGREVYTVVIEAPVAVSITVQPRTLTFSTLNQKATYSVTFKRIGSISPSIEFAKGYIKWVSDKHDVRSPISVKFV 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3453942 3456263 - CcPI632755_01g003440.1 Cco01g0344 169206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0344 773 Pfam Subtilase family 159 601 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco01g0344 773 Pfam PA domain 393 478 IPR003137 -
Cco01g0344 773 ProSiteProfiles Serine proteases, subtilase domain profile. 143 627 - -
Cco01g0344 773 SUPERFAMILY PA domain 378 512 IPR046450 -
Cco01g0344 773 Pfam Fibronectin type-III domain 674 770 IPR041469 -
Cco01g0344 773 Gene3D Peptidase S8/S53 domain 161 640 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco01g0344 773 FunFam subtilisin-like protease SBT1.5 361 500 - -
Cco01g0344 773 FunFam Subtilisin-like protease SBT1.5 161 373 - -
Cco01g0344 773 SUPERFAMILY Subtilisin-like 135 631 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco01g0344 773 CDD Peptidases_S8_3 133 594 IPR034197 -
Cco01g0344 773 Gene3D - 644 772 - -
Cco01g0344 773 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 60 768 IPR045051 -
Cco01g0344 773 Gene3D - 361 500 - -
Cco01g0344 773 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 51 136 IPR037045 -
Cco01g0344 773 PRINTS Subtilisin serine protease family (S8) signature 231 244 IPR015500 -
Cco01g0344 773 PRINTS Subtilisin serine protease family (S8) signature 159 178 IPR015500 -
Cco01g0344 773 PRINTS Subtilisin serine protease family (S8) signature 557 573 IPR015500 -
Cco01g0344 773 Pfam Peptidase inhibitor I9 60 136 IPR010259 -
Cco01g0344 773 CDD PA_subtilisin_like 369 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0344 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0344 Cco-Chr1:3453942 Cco09g0103 Cco-Chr9:902807 9.00E-170 dispersed
Cco01g0344 Cco-Chr1:3453942 Cco05g0916 Cco-Chr5:7916287 6.70E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00696 . . . . . . . . . . . . . . . . . . Cla01g00326 Cam01g0337 Cec01g0331 Cco01g0344 Clacu01g0341 Cmu01g0321 Cre09g2189 Lsi09g00341 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62