Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0359 ATGGCCGCTTCTGGGGGCACTAGTTATAGAAATGGCGCCACTTCCAGAAATTCACTTAAGCTCGATAAGCCCTTTTCTGCTAATTCCAACCCCAAGTCTTCTCTCAAGTCAAAGTCTCTTCCGAATTCTGCTCTTCGCCGCAGTAGCCCTGCATCTCTCGGAGCTGCCAAGGATGATGGTGCAGTTCCTGGAAGAGTTCGAGTGGCTGTTAGATTGCGACCACGCAATACAGAAGAATTGATAGCCGATGCTGATTTTGCTGATTGTGTAGAATTACAGCCAGAGCTTAAAAGGTTGAAACTTCGGAAGAACAACTGGGATTCAGATACTTATGAGTTTGATGAAGTGCTAACTGAGTTTGCATCTCAAAAGCGTGTTTATGAAGTCGTGGCAAAACCTGTTGTGGAGAGTGTATTGGATGGCTACAATGGAACAATTATGGCATATGGACAGACTGGTACCGGTAAAACATATACTCTTGGAAGACTTGGAGAGGAAGACACCGCTGACCGTGGAATCATGGTGCGTGCTATGGAGGACATTTTGGCCGAAGTTTCTTTGGAGACGGATTCTGTCTCAGTATCCTACCTGCAGCTTTATATGGAGAGCATACAAGACCTTCTTGACCCTGCAAATGATAACATTTCCATTGTAGAAGATCCTAAAACTGGAGATGTATCAGTACCTGGAGCTAGCCTTGTAGAGATTAGACATCAGGAGAGCTTTGTGGAACTACTAAGATTGGGGGAAGCTCATCGGTTTGCTGCAAATACAAAACTGAATACTGAATCTTCTCGTAGTCATGCAATTCTCATGGTACACGTAAAGCGGTCTCTAAAAGGAAGGGATTCAACTCTATCAAGTGATATTGGTGGGAATTCTCATTTGGTTAAGACCTTGAAACCTCCAATTGTTCGTAAGGGAAAATTAGTGGTAGTGGATCTTGCTGGTTCTGAGCGTATTGACAAGTCAGGAAGTGAAGGACATACACTTGAAGAAGCCAAATCCATCAATCTCTCCCTGAGTGCATTAGGGAAGTGCATAAATGCACTTGCTGAGAATAGTGCACACGTTCCAGTTAGGGATTCAAAGCTGACGAGATTACTTCGGGATTCATTTGGAGGAACAGCAAGAACTTCACTGGTTATTACTATTGGTCCTTCACCTCGACATCGTGGAGAGACTACGAGTACAATATCCTTCGGCCAACGGGCTATGAAGGTGGAAAATATGCTGAAGATAAAAGAAGAATTTGATTATAAAAGTTTGTCAAGAAGGTTGGACATTCAATTAGACAAACTGATTGCTGAACATGAAAGGCAGCAAAAGGGGTTTGAGAATGAAATTGAAAGGATTACCAAAGAAGCACAGGATCGCATATCTGAGGCTGAAAGAAGTCATTCAAATGCCCTGGAGAAGGAAAGGCTGAAATATCAGAAGGATTACATGGAATCGATCAAGAAGCTTGAAGATCAACTGATGGTGAAGCAGAAGAAGCTTGGTGGGGAGAAAGTAATTAATGAAGAAGTTGCTGCTTCTGCTTCTAGTGTAATTGCTAATGGAGAGGGTTTGATAGTGTCTGCTGACAAGGAAGTGGCAGAGCTAAAGAAGTTGGTTAAAAAGGAAACGCTTTTGAGGCAAGCAGCTGAAGAGGAAGTTAACAATCTTAGAAGTCAAGTAGCCCAACTGAAGAGATCAGAGACGTCATGCAATTCAGAGATCTCAAAGCTCCGCAAGACTCTAGAAGATGAACAAAATCAGAAAAAGAAACTGGAAGGAGATATAGCTATGCTACAAAGCCAGTTGTTGCAATTGAGCTTTGAAGCAGATGAGACCAGTAGGCGATTGGACAGAGGTGAGACTGGGAAAGTCCTCGGTTCTCTAGATTCTCTCGTGCAACAAGTTAAACAGTCACAGGCTCAGGACGCTGGAAACGGAGAGAAGGCTTCAGTGGCCAAGCTCTTTGAGCAAGTGGGACTGCAAAAGATCTTGTCGTTGCTGGAAGCTGAGGATTACGACGTCAGAATTCATGCTGTGAAAGTTGTTGCAAATCTTGCAGCTGAAGAAACAAATCAGCAAAAGATTGTTGAGGCTGGGGGCCTTTCTTCTTTGCTGATGCTACTCAGAAGCACTGAGGATGAGACAATACACAGAGTTGCTGCAGGTGCAATTGCAAATCTGGCCATGAATGAGACCAACCAAGAGCTCATTATGTCCCACGGAGGCATTAGCTTACTCTCCACGACCGCTGCCAATGCTGAGGATCCCCAAACTCTTCGTATGGTTGCTGGAGCAATCGCCAATTTGTGTGGCAATGATAAGCTGCAGACAAAGCTAAGGGGCGAAGGCGGTATTAAGGCATTGCTTGGTATGGTAAGATGCAAACATCCTGATGTTCTTGCACAAGTTGCTAGAGGAATTGCAAATTTTGCCAAGTGCGAGTCGAGGGCCTCTACACAAGGGACCAAGGCTGGAAAGTCTTTCTTAATTGAAGATGGAGCACTCCCATGGATTGTGCAGAATGCCAACAATGAAGCATCGACGATAAAACGACATATCGAACTTGCACTCTGTCATTTAGCACAACATGAAGTGAATTCAAAAGACATGATCAGTGGAGGTGCCCTGTGGGAACTAGTTCGGATATCGCGGGACTGTTCACGGGAAGACATAAGGACTCTTGCACATCGAACATTAATATCAAGTCCAACATTTCAAGCGGAAATGAGACGATTACGAATAGATTATTGA 2751 44.02 MAASGGTSYRNGATSRNSLKLDKPFSANSNPKSSLKSKSLPNSALRRSSPASLGAAKDDGAVPGRVRVAVRLRPRNTEELIADADFADCVELQPELKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTIMAYGQTGTGKTYTLGRLGEEDTADRGIMVRAMEDILAEVSLETDSVSVSYLQLYMESIQDLLDPANDNISIVEDPKTGDVSVPGASLVEIRHQESFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKRSLKGRDSTLSSDIGGNSHLVKTLKPPIVRKGKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTISFGQRAMKVENMLKIKEEFDYKSLSRRLDIQLDKLIAEHERQQKGFENEIERITKEAQDRISEAERSHSNALEKERLKYQKDYMESIKKLEDQLMVKQKKLGGEKVINEEVAASASSVIANGEGLIVSADKEVAELKKLVKKETLLRQAAEEEVNNLRSQVAQLKRSETSCNSEISKLRKTLEDEQNQKKKLEGDIAMLQSQLLQLSFEADETSRRLDRGETGKVLGSLDSLVQQVKQSQAQDAGNGEKASVAKLFEQVGLQKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLSSLLMLLRSTEDETIHRVAAGAIANLAMNETNQELIMSHGGISLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQTKLRGEGGIKALLGMVRCKHPDVLAQVARGIANFAKCESRASTQGTKAGKSFLIEDGALPWIVQNANNEASTIKRHIELALCHLAQHEVNSKDMISGGALWELVRISRDCSREDIRTLAHRTLISSPTFQAEMRRLRIDY 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3560628 3569676 + CcPI632755_01g003590.1 Cco01g0359 169221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0359 916 Gene3D - 627 750 IPR011989 -
Cco01g0359 916 MobiDBLite consensus disorder prediction 1 58 - -
Cco01g0359 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 443 IPR027417 -
Cco01g0359 916 Gene3D Kinesin motor domain 57 438 IPR036961 -
Cco01g0359 916 PRINTS Kinesin heavy chain signature 141 162 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco01g0359 916 PRINTS Kinesin heavy chain signature 309 327 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco01g0359 916 PRINTS Kinesin heavy chain signature 358 379 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco01g0359 916 SMART kinesin_4 63 416 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco01g0359 916 SUPERFAMILY ARM repeat 649 899 IPR016024 -
Cco01g0359 916 Pfam Armadillo/beta-catenin-like repeat 691 728 IPR000225 GO:0005515(InterPro)
Cco01g0359 916 Pfam Kinesin motor domain 71 408 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco01g0359 916 PANTHER KINESIN-LIKE PROTEIN KIF11 64 883 IPR047149 GO:0005876(PANTHER)|GO:0008574(PANTHER)|GO:0051231(PANTHER)|GO:0072686(PANTHER)|GO:0090307(PANTHER)
Cco01g0359 916 SMART arm_5 688 729 IPR000225 GO:0005515(InterPro)
Cco01g0359 916 SMART arm_5 772 812 IPR000225 GO:0005515(InterPro)
Cco01g0359 916 SMART arm_5 648 687 IPR000225 GO:0005515(InterPro)
Cco01g0359 916 SMART arm_5 730 771 IPR000225 GO:0005515(InterPro)
Cco01g0359 916 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 699 742 IPR000225 GO:0005515(InterPro)
Cco01g0359 916 Gene3D - 751 903 IPR011989 -
Cco01g0359 916 Coils Coil 435 473 - -
Cco01g0359 916 MobiDBLite consensus disorder prediction 1 49 - -
Cco01g0359 916 CDD KISc 65 406 - -
Cco01g0359 916 Coils Coil 479 499 - -
Cco01g0359 916 Coils Coil 574 601 - -
Cco01g0359 916 FunFam Kinesin-like protein 628 904 - -
Cco01g0359 916 Coils Coil 532 566 - -
Cco01g0359 916 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 658 700 IPR000225 GO:0005515(InterPro)
Cco01g0359 916 FunFam Kinesin-like protein 57 438 - -
Cco01g0359 916 ProSitePatterns Kinesin motor domain signature. 308 319 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cco01g0359 916 ProSiteProfiles Kinesin motor domain profile. 65 408 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0359 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0359 Cco-Chr1:3560628 Cco08g0913 Cco-Chr8:21036120 1.30E-196 dispersed
Cco01g0359 Cco-Chr1:3560628 Cco05g0257 Cco-Chr5:2026393 7.60E-293 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g462 . . Bda06g00057 . . . Bma07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00360 . . . . . Bda09g00070 . . . . . . . . . . . . Cpe13g00198 Bhi12g00357 . . . . . Lcy12g1744 Cla01g00338 Cam01g0351 Cec01g0347 Cco01g0359 Clacu01g0355 Cmu01g0335 Cre09g2175 Lsi09g00364 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80