Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0360 ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACCACACCAATTCCACAACAACAATAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGCCTCAAGCGCGACCGCGATGACGACGACCACCACACCAACAACTCCAACCCCAACAGCGCTGGCGATGGTGTCCCCGGCTCCACCGACGGAGAAATCACTCGGCGTCCTAGAGGTAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATTATTACTCGCGACAGCGCCAACGCCCTTCGTACCCACGTCATCGAAGTCACCGACGGCTGCGATATCGTCGACAGCGTCGCTACCTTCGCTCGTCGACGACAACGTGGCGTTTGTATTATGAGTGGTACTGGTACTGTCACCAACGTCACTCTCCGTCAACCCGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGGTTCGAGATCTTATCTCTCGCCGGCTCTTTTCTTCCTCCTCCCGCTCCTCCAGCTGCTACTACTTTAACTATTTATCTCGCTGGCGGTCAAGGTCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCTGGTCCTGTCGTAATCATGGCTGCCTCCTTTAGTAACGCTGCTTATGAACGGCTTCCGTTGGAGGATGACGATCAGCCGCCGCTTCCGTCGCTACAAGGCGGCGGCGGAATTGGGTCACCGGATGAAGTTGGACAGTCTCAAACAGCGCAAACGGCGCATCATCAGCAGAATCAACAACAACAGCAACTTCTTAGCGACGGAAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCTGAAGCAGCGTATTGGGCAACTGCCCGACCTCCGTACTAA 912 54.06 MDSHSLPPPFHTRDFHLQPHQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNSAGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYWATARPPY 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3573258 3574169 - CcPI632755_01g003600.1 Cco01g0360 169222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0360 303 CDD DUF296 102 168 IPR005175 -
Cco01g0360 303 MobiDBLite consensus disorder prediction 244 270 - -
Cco01g0360 303 MobiDBLite consensus disorder prediction 223 283 - -
Cco01g0360 303 MobiDBLite consensus disorder prediction 1 93 - -
Cco01g0360 303 ProSiteProfiles PPC domain profile profile. 98 237 IPR005175 -
Cco01g0360 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 229 - -
Cco01g0360 303 FunFam AT-hook motif nuclear-localized protein 101 228 - -
Cco01g0360 303 MobiDBLite consensus disorder prediction 19 34 - -
Cco01g0360 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 214 IPR005175 -
Cco01g0360 303 MobiDBLite consensus disorder prediction 35 53 - -
Cco01g0360 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 303 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cco01g0360 303 PIRSF ESCAROLA 12 303 IPR014476 GO:0003680(InterPro)
Cco01g0360 303 Gene3D - 101 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0360 Cco-Chr1:3573258 Cco05g0307 Cco-Chr5:2457360 1.20E-69 dispersed
Cco01g0360 Cco-Chr1:3573258 Cco01g0365 Cco-Chr1:3642339 1.60E-18 proximal
Cco06g1635 Cco-Chr6:26963497 Cco01g0360 Cco-Chr1:3573258 7.70E-63 transposed
Cco07g0581 Cco-Chr7:7852078 Cco01g0360 Cco-Chr1:3573258 7.90E-16 transposed
Cco01g0360 Cco-Chr1:3573258 Cco05g0258 Cco-Chr5:2040441 2.10E-69 wgd
Cco01g0360 Cco-Chr1:3573258 Cco06g0033 Cco-Chr6:328259 1.20E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0360 - - - 0.0