Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0365 ATGGAGGGAAGGGATGGTGGTGGCGCAAGTAGTGGGGTTACTGTGGTAGGATCAGATGCTCCGTCGGAGTACAAAATAGCTCCGAGGACCTCCGATAACCCACCGCAGACTGGTGGATCAACGCCGCCGCCGGCGACTCAATCAACTTCGACGCCGTCGGCTTCAGCTCAAGTAACTGCGCAGCCTCCGCCGCCTACGGCGGCCTCCTCAGTACCGGGAAAGAAGAAAAGAGGGAGACCCAGAAAATATGGACCCGATGGCTCTGTTTCTATGGCTCTGTCTCCCAAGCCGATATCGTCATCAGTGCCGCCGCCGGTGATCGACTTCTCGACGGAGAAGAAGGGGAAAGTACGGCCGGCGAGCGCTGTGAGTAAAAGCAAGTTCGAAGTGGATAATTTAGGCGACTGGGTTCCATGTTCTGTTGGTGGAAATTTTACACCTCATATCATCACTGTCAATGCAGGGGAGGATGTCACCATGAAGATTATATCCTTTTCTCAACAAGGGCCTCGAGCTATATGCATTTTATCTGCGAACGGTGTGATCTCAAGTGTCACTCTTCGTCAGCCGGATTCATCTGGAGGAACACTAACTTATGAGGGACGCTTTGAAATACTTTCCTTGTCTGGCTCATTCATGCCTAGTGACAACGGAGGAACTAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTGGCAAGTCCAGATGGGCGTGTCGTAGGCGGTGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACACGAGCAGAAACTGAAAAAGCCAAAACATGATACTATTTCACCGGCCCCGCCAACTGCTGCCATTCCAATATCTTGCGTTGATCCTAAGTCCAACCTCTCACCTTCCAGTTCCTTTCGTGGCGATAACTGGTCAATGCTGCCAACTGATTCAAGGAATAAGTCAACTGATATCAATGTATCCCTACCCAGTGCTTGA 993 50.45 MEGRDGGGASSGVTVVGSDAPSEYKIAPRTSDNPPQTGGSTPPPATQSTSTPSASAQVTAQPPPPTAASSVPGKKKRGRPRKYGPDGSVSMALSPKPISSSVPPPVIDFSTEKKGKVRPASAVSKSKFEVDNLGDWVPCSVGGNFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKLKKPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3642339 3645970 + CcPI632755_01g003650.1 Cco01g0365 169227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0365 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 45 309 IPR039605 GO:0003680(InterPro)
Cco01g0365 330 MobiDBLite consensus disorder prediction 1 113 - -
Cco01g0365 330 MobiDBLite consensus disorder prediction 29 64 - -
Cco01g0365 330 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 266 - -
Cco01g0365 330 ProSiteProfiles PPC domain profile profile. 142 284 IPR005175 -
Cco01g0365 330 FunFam AT-hook motif nuclear-localized protein 1-like 147 278 - -
Cco01g0365 330 MobiDBLite consensus disorder prediction 294 330 - -
Cco01g0365 330 MobiDBLite consensus disorder prediction 267 330 - -
Cco01g0365 330 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 260 IPR005175 -
Cco01g0365 330 CDD DUF296 146 237 IPR005175 -
Cco01g0365 330 Gene3D - 147 276 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0365 Cco-Chr1:3642339 Cco05g0263 Cco-Chr5:2106531 4.30E-89 dispersed
Cco01g0360 Cco-Chr1:3573258 Cco01g0365 Cco-Chr1:3642339 1.60E-18 proximal
Cco04g1180 Cco-Chr4:27230573 Cco01g0365 Cco-Chr1:3642339 1.50E-14 transposed
Cco11g0056 Cco-Chr11:602073 Cco01g0365 Cco-Chr1:3642339 5.20E-103 transposed
Cco01g0365 Cco-Chr1:3642339 Cco05g0898 Cco-Chr5:7771166 1.70E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0365 - - - 0.0