Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0387 ATGGAACAACCCACCTCCAATTCTCCTCTACTTCTCATAAATTCCCTCAATTCCTCAGTTGACCAATCTCCTTTCCTCTTCACCTTCTTCGCCGCTCTTCTAATTTTCCTCTATGTAAAACTCACGCGCCGGCGCGTGCCTCTTCCACCTGGTCCCTGGGGCGTTCCACTACTCGGAAACCTTCCATTCCTTGACCCCGATCTTCACACGTACTTTGCCGAATTAGGCCGAAAATATGGCCCAATAGTAAAGCTCCAACTCGGCAATAGAATTGGTATAATCGTAAATTCACCGTCCGTAGCACGTGAAGTGTTGAAAGACCACGATGTTACATTTGCGAATCGCGATGTTCCTCAAGCCGGGAGAGCCGCCTCGTACGGCGGTTCTGACATAGTTTGGACACCGTACGGACCCGAGTGGCGAATGTTGAGAAAAGTTTGTGTGTTAAAGATGCTGAGCAACGCCACTTTGGATAGCGTTTACGAGCTCCGCCGTAGAGAGGTGAGAAACACGGTGGCTCACTTGTACCGGCGATGTGGGTCAGCAGTGAACGTGGGAGAGCAGGGGTTTTTGACGGTTTTCAACGTGGTTACAAGCATGTTGTGGGGTGGTTCAGTGGAAGGAGAGCAGAGGGATGGTCTTGCAGCGGAGTTTAGAGAGACAATTTCGGAAATAACAGAGCTATTGGGAAAACCTAATATTTCGGACTTTTTTCCAAGCTTGGCCCGTTTTGATCTCCAAGGGATTGAGAAGAAGATGCGTGAGATTGCTCCGAGATTTGATAACATTTTCGACAAGATGATAGATGAAAGATTGAAAATTGGTGGTGGAGATGACGACGGGAGTGTCAAGAAAAATGATTTCTTGCAGTTCTTACTTGAGGTTAAAGATGAAGGAGAATCCAACACTCCTCTCACCATGACCCACCTTAAAGCCTTGCTCATGGATATGGTGGTCGGAGGGACAGACACATCGTCAAATACCATAGAATTTGCGTTGGCAGAAATGATAAAGAACCCAAAAACTCTAAAGAAAGCACAAGAAGAACTCACCGCCGTGGTCGGAGAAGACAACATCGTCGAAGAGTCCCACATTCACAGTTTCCCATATCTGAAGGCCGTAATGAAAGAAACTTTACGTTTACACCCAATTCTACCTCTGCTCGTGCCGCACTGTCCAAGCGAGACCACCATCGTCTCCAATTACGCAATTCCAAAGGGCTCTCGAGTGTTCATCAATGCTTGGGCCATTCAGCGAGACCCCAATCATTGGGAAAATCCATTGGTGTTTGATCCAGAGAGGTTTCTCAAGACCGAGAAGTGGGATTTTGGTGGGAGTGATTTTCGTTACTTCCCATTCGGGTCCGGCAGAAGAAACTGTGCAGGGATAGCCATGGCGGAAAGAATGGTAATGTATTTACTTGCTACGCTTTTGCATTCTTTTGACTGGAAATTGGAAGATGGTAAGAAGATGGAAGTTGAGGAGAAATTTGGGATTGTTTTGAAGATGAAGTCGCCTCTTGTTCTCATTCCAACGCCAAGGCTATCTAATCCAACTTTGTATCAATAA 1569 46.59 MEQPTSNSPLLLINSLNSSVDQSPFLFTFFAALLIFLYVKLTRRRVPLPPGPWGVPLLGNLPFLDPDLHTYFAELGRKYGPIVKLQLGNRIGIIVNSPSVAREVLKDHDVTFANRDVPQAGRAASYGGSDIVWTPYGPEWRMLRKVCVLKMLSNATLDSVYELRRREVRNTVAHLYRRCGSAVNVGEQGFLTVFNVVTSMLWGGSVEGEQRDGLAAEFRETISEITELLGKPNISDFFPSLARFDLQGIEKKMREIAPRFDNIFDKMIDERLKIGGGDDDGSVKKNDFLQFLLEVKDEGESNTPLTMTHLKALLMDMVVGGTDTSSNTIEFALAEMIKNPKTLKKAQEELTAVVGEDNIVEESHIHSFPYLKAVMKETLRLHPILPLLVPHCPSETTIVSNYAIPKGSRVFINAWAIQRDPNHWENPLVFDPERFLKTEKWDFGGSDFRYFPFGSGRRNCAGIAMAERMVMYLLATLLHSFDWKLEDGKKMEVEEKFGIVLKMKSPLVLIPTPRLSNPTLYQ 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3823790 3826877 - CcPI632755_01g003870.1 Cco01g0387 169249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0387 522 PANTHER OS08G0547900 PROTEIN 28 522 - -
Cco01g0387 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco01g0387 522 FunFam Cytochrome P450 - like protein 38 508 - -
Cco01g0387 522 SUPERFAMILY Cytochrome P450 49 514 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 CDD CYP76-like 77 511 - -
Cco01g0387 522 Gene3D Cytochrome P450 37 509 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 Pfam Cytochrome P450 49 506 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS E-class P450 group I signature 76 95 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS E-class P450 group I signature 100 121 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g0387 522 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0381 Cco-Chr1:3804097 Cco01g0387 Cco-Chr1:3823790 2.30E-124 dispersed
Cco01g0383 Cco-Chr1:3817197 Cco01g0387 Cco-Chr1:3823790 7.80E-108 dispersed
Cco01g0387 Cco-Chr1:3823790 Cco01g0389 Cco-Chr1:3834209 1.70E-233 dispersed
Cco01g0386 Cco-Chr1:3821735 Cco01g0387 Cco-Chr1:3823790 6.80E-51 tandem
Cco01g0387 Cco-Chr1:3823790 Cco01g0388 Cco-Chr1:3830046 2.00E-128 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0387 - - - 0.0