Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0399 ATGTCATCTTCTTCATCTTCTTCTTCTCCTACTTCTACTACTACTGCTACCACTACGACTACGTTATCTCAACAACAACACCTGCAACAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAACTCTGTTATGTCCATTGCAACATTTGCGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTTCGATGTGGACACTGCACGAATCTGCTTCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCACCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTAGAAAATATGGCTACACCAAATTCCAATTATCTTATCAACCAGTTTGGAGCTACTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAACTCCCTAGGCCACCAGCCATTAACAGACCTCCGGAGAAGAGACAGAGAGTGCCTTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTTATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA 729 44.86 MSSSSSSSSPTSTTTATTTTTLSQQQHLQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENMATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3954180 3956647 - CcPI632755_01g003990.1 Cco01g0399 169261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0399 242 MobiDBLite consensus disorder prediction 1 31 - -
Cco01g0399 242 SUPERFAMILY HMG-box 148 196 IPR036910 -
Cco01g0399 242 CDD HMG-box_SF 157 193 - -
Cco01g0399 242 PANTHER PROTEIN YABBY 6-RELATED 39 212 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cco01g0399 242 Pfam YABBY protein 39 203 IPR006780 GO:0007275(InterPro)
Cco01g0399 242 Gene3D High mobility group box domain 146 211 IPR036910 -
Cco01g0399 242 FunFam Axial regulator YABBY 148 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0399 Cco-Chr1:3954180 Cco02g2409 Cco-Chr2:36471252 5.30E-44 dispersed
Cco01g0399 Cco-Chr1:3954180 Cco10g0299 Cco-Chr10:3552306 2.60E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58569 PF04690 YABBY 2.90E-70 CL0114 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0399 K25796 - csv:101214748 431.409