Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0406 ATGTCAGCTTACAGAGACGAAGATCCTCGCATCCATGGCATCAGGACTAAGATTCGTGTTGTCCCTAATTTCCCTCAACCAGGTATCATGTTCCAAGACATAACCACTCTGTTACTCGACCCCAAAGCATTCAAAGATACTATTGATTTGTTCGTCGAGCGATACAAAGGGAAAAACATTTCAGTTGTTGCAGGAATTGAAGCTCGAGGTTTTATATTTGGCCCTCCAATTGCATTGGCTATAGGAGCAAAATTTGTTCCTTTAAGGAAACCAAGGAAGCTACCTGGAGAAGTTATTTCTGAAAAGTACATATTAGAATATGGAAGTGATTGCCTGGAGATGCATGTTGGAGCTGTCAAACCACATGAACGGGCCTTGGTGGTGGATGACTTAATTGCGACAGGTGGCACTCTTCGTGCAGCTATGAATTTACTTGAACGTGTCGGAGCTGAAGTAATTGAATGTGCTTGCGTCATTGAATTGCCAGATTTAAAGGGTCGGGAGCGGTTGAACGATAAGCCATTATTTGTGCTAGTAGAGTACCAATAA 549 42.62 MSAYRDEDPRIHGIRTKIRVVPNFPQPGIMFQDITTLLLDPKAFKDTIDLFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPRKLPGEVISEKYILEYGSDCLEMHVGAVKPHERALVVDDLIATGGTLRAAMNLLERVGAEVIECACVIELPDLKGRERLNDKPLFVLVEYQ 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4053076 4057891 + CcPI632755_01g004060.1 Cco01g0406 169268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0406 182 Hamap Adenine phosphoribosyltransferase [apt]. 14 181 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Cco01g0406 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 6 180 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
Cco01g0406 182 FunFam Adenine phosphoribosyltransferase 1 2 181 - -
Cco01g0406 182 CDD PRTases_typeI 48 180 IPR000836 -
Cco01g0406 182 NCBIfam adenine phosphoribosyltransferase 15 181 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Cco01g0406 182 Pfam Phosphoribosyl transferase domain 41 173 IPR000836 -
Cco01g0406 182 SUPERFAMILY PRTase-like 13 175 IPR029057 -
Cco01g0406 182 Gene3D - 2 182 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0406 K00759 - - csv:101216186 356.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0406 Cco-Chr1:4053076 Cco08g1826 Cco-Chr8:29278141 1.00E-76 dispersed
Cco08g1511 Cco-Chr8:26843209 Cco01g0406 Cco-Chr1:4053076 5.30E-69 transposed
Cco01g0406 Cco-Chr1:4053076 Cco10g0292 Cco-Chr10:3454983 1.10E-86 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g0406 . 30 180 PRT Gene Family AT1G80050 75.5 6.4e-62 233.8
Cco10g0292 . 30 180 PRT Gene Family AT1G80050 74.8 9.2e-61 229.9
Cco08g1511 . 33 169 PRT Gene Family AT1G80050 81.0 1.6e-57 219.2
Cco08g1826 . 108 257 PRT Gene Family AT1G80050 70.0 6.9e-56 213.8
Cco08g1511 . 1 148 PRT Gene Family AT5G11160 81.1 4.2e-64 241.1
Cco01g0406 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Cco08g1826 . 86 223 PRT Gene Family AT5G11160 73.2 2.3e-54 208.8
Cco10g0292 . 8 145 PRT Gene Family AT5G11160 71.0 8.2e-52 200.3
Cco08g1826 . 79 260 PRT Gene Family AT1G27450 82.4 1.2e-80 296.2
Cco01g0406 . 7 180 PRT Gene Family AT1G27450 74.7 9.2e-73 270.0
Cco10g0292 . 1 180 PRT Gene Family AT1G27450 71.7 1.9e-70 262.3
Cco08g1511 . 11 169 PRT Gene Family AT1G27450 73.6 7.1e-65 243.8
Cco11g0396 . 73 557 PRT Gene Family AT2G16570 85.2 5.8e-243 837.0
Cco11g0396 . 73 557 PRT Gene Family AT4G34740 86.0 1.5e-243 839.0
Cco11g0396 . 28 530 PRT Gene Family AT4G38880 70.2 3.1e-198 688.3
Cco08g1826 . 79 260 PRT Gene Family AT1G27450 82.4 1.2e-80 296.2
Cco01g0406 . 7 180 PRT Gene Family AT1G27450 74.7 9.2e-73 270.0
Cco10g0292 . 1 180 PRT Gene Family AT1G27450 71.7 1.9e-70 262.3
Cco08g1511 . 11 169 PRT Gene Family AT1G27450 73.6 7.1e-65 243.8
Cco01g0406 . 30 180 PRT Gene Family AT1G80050 75.5 6.4e-62 233.8
Cco10g0292 . 30 180 PRT Gene Family AT1G80050 74.8 9.2e-61 229.9
Cco08g1511 . 33 169 PRT Gene Family AT1G80050 81.0 1.6e-57 219.2
Cco08g1826 . 108 257 PRT Gene Family AT1G80050 70.0 6.9e-56 213.8
Cco10g0292 . 5 97 PRT Gene Family AT4G22570 87.1 3.0e-44 174.5
Cco01g0406 . 6 104 PRT Gene Family AT4G22570 82.8 5.2e-44 173.7
Cco08g1826 . 84 175 PRT Gene Family AT4G22570 82.6 1.0e-39 159.5
Cco08g1511 . 11 100 PRT Gene Family AT4G22570 78.9 2.1e-37 151.8
Cco10g0292 . 1 96 PRT Gene Family AT4G12440 84.4 4.9e-41 163.7
Cco01g0406 . 1 96 PRT Gene Family AT4G12440 84.4 8.4e-41 162.9
Cco08g1826 . 79 174 PRT Gene Family AT4G12440 79.2 8.7e-38 152.9
Cco08g1511 . 4 99 PRT Gene Family AT4G12440 78.1 3.3e-37 151.0
Cco08g1511 . 1 148 PRT Gene Family AT5G11160 81.1 4.2e-64 241.1
Cco01g0406 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Cco08g1826 . 86 223 PRT Gene Family AT5G11160 73.2 2.3e-54 208.8
Cco10g0292 . 8 145 PRT Gene Family AT5G11160 71.0 8.2e-52 200.3
Cco08g0859 . 1 186 PRT Gene Family AT1G71750 65.0 1.8e-69 259.2
Cco09g2361 . 39 491 PRT Gene Family AT1G55810 85.5 2.3e-226 781.6
Cco05g1369 . 19 482 PRT Gene Family AT1G55810 73.5 1.4e-199 692.6
Cco09g2361 . 88 496 PRT Gene Family AT3G27440 76.5 1.6e-184 642.5
Cco05g1369 . 80 482 PRT Gene Family AT3G27440 75.4 8.8e-180 626.7
Cco05g1369 . 1 482 PRT Gene Family AT3G27190 85.7 2.2e-246 848.2
Cco09g2361 . 35 490 PRT Gene Family AT3G27190 75.5 6.8e-208 720.3
Cco04g0972 . 6 288 PRT Gene Family AT3G53900 65.7 6.0e-106 380.9
Cco09g2361 . 25 491 PRT Gene Family AT4G26510 84.7 6.5e-232 800.0
Cco05g1369 . 11 482 PRT Gene Family AT4G26510 75.8 7.0e-210 726.9
Cco05g1369 . 1 482 PRT Gene Family AT5G40870 86.3 1.3e-246 849.0
Cco09g2361 . 35 493 PRT Gene Family AT5G40870 74.2 1.3e-206 716.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139