Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0408 ATGAAGGTCAAGGAAATGCACCCTCTGTGTTGCATCTCGGTCGACACTTTCGGAATCGGAGCATGTGGTGGCGATGGAGAAAACTCCAAGGATGAGGCTGCGGCCTTGGCTCTCTCTAGGACCAAAAGCATGCCGGCGAGTTTGGCGGCTTTTTCCGATGGATCTGATGGGAATGTCATCAAACGGCCACCGGCCGGATCCAAATCCGCGGTCGCCGGAGTTCTTCACAAGTGGACCAATTACGGTAAAGGGTGGAGATCGAGGTGGTTCTTCCTCCGCAATGGGGTATTATCGTACGCGAAGATTCGCCGACCGGAGAATCTGAATCTTCTTGCTCCATACGACGATGTTCGATTGATCGGAGAGATTTCGAGCAATCGGATTCCGAGGGGAGAGGAGAAAGGTGGAGGGAGACGAAAGCATCAGAAAGCGGTGGGAGTGGTTCATTTGAAGATAGGATCATTTCGAGAGAGCAAGTCGGATGATAGGAGGTTTTATATATCCACTGCTACAAAGACTCTTCATTTGAGAACTAATTCAAAGAGTGATCGAGGGGCTTGGATTCAAGCTTTGGCTTCAGATCGAAGCATATCTCCTCAAACATCACTGAATTATAATCTCTCCCCAGTGCCAAGTGATTTATTGGTGTCGACGGACAGACTGAAGAAGCGTTTAATTGAAGAGGGAATCAGTGAAACTCTTGTAAAGGACTGCGAACAGATAATGCTCGCCGAATTCTCCGAAATTCAAGGGCAGCTTCAAGTTCTATGTGAAGAACGATATAACCTGCTTGACACAATTAGGCAGTTGGAGGCTGCTAATTTTGAAGCTGAAGCTTCTGGAACGAATGATGGCGAATTCCAACTTACGAAACATGATCTTTCCTCTGAAGAACGTGGAAAATATAGTGAATGCAGCACCACGGAATCATCGGATGATATCGAGAAACAAGAGTTTGAGGAGGAGGTTTCGGACGAAGACGAAGTGTCATTTTACGACACCAGGGATTCTTTTTCTGAAAATTCTGCCGATGATGGAATTAATAGCAAGGCTGAAAATTGTCATTATGACGATGCTGAGACAATGCCTGCTAAACTGCAGTTACAGAACAGATATTCACACATTCAAAGGCGAAAACGGCTTCCCGATCCGGTGGAGAAGGAGAAACGAGTCAGCCTTTGGTCAATGATCAAAGACAATGTGGGAAAAGATTTGACAAGAGTATGCCTCCCTGTTTACTTCAATGAGCCGATATCATCACTACAGAAATGCTGTGAGGACATGGAGTATTCGTATCTATTAGATCAGGCATACGAGCAAGGGAAGCAGGGAAATAGTCTACAAAGGATTCTGAATGTTGCAGCATTCGCGGTTTCAGGGTACGCTTCGTCCGAAGGCAGGCATTGCAAACCATTCAATCCCCTGTTGGGGGAAACTTATGAAGCGGATTTTCCAGAGAAAGGGATTCGGTTTTTCTCCGAGAAGGTGAGCCACCATCCAACTCTGATAGCATGCCATTGTGAGGGGAGAGGGTGGAAGTTTTGGGGAGATAGCAACCTTCAGTCCAAATTCTCGGGAAGGTCAATTCAGCTGGACCCTCTTGGAGTTCTCACACTCGAGTTTGATGATGGCGAAATCTTCCAGTGGAGCAAGGTAACAACAAATATTTATAATCTCATCCTCGGGAAAGTATATTGTGATCACCATGGAACTATGCACATACGTGGTAACCGGGACTATTCGTGCAACCTAAAGTTCAAAGAGCAATCTTTTCTCGACCGAAATCCTCGTCAGGTTCATGGGTACGTCGAATATGCCAACGGGGAAAAAGTTGCGACATTGTTTGGGAAGTGGGACGACAGCATGTATTATGTAAATGGTCATGAGAATGTAAATTCAAAGAGTTGTGATGGTACTTTGCTGTGGAAAAGCAATGAACCGCCACAGAATCTGACTCGATACAACTTGACTTCTTTTGCGATCACTTTGAATGAGCTGACACCAGGGCTCAAGGAGATGCTCCCTCCCACGGATTCCAGACTCCGACCGGATCAACGGCATCTGGAAAACGGCGAGTACGATAAAGCCAATGCAGAGAAGCTACGGTTAGAGCAAAGGCAAAGAATTTCAAGGAAGTTACAAGAAAACGGTTGGAAGCCGAGATGGTTTCAGAGAGAGGGTGAAGATGGTCCCTTTCGGATTCAGATATATGGGAGGTAG 2220 46.22 MKVKEMHPLCCISVDTFGIGACGGDGENSKDEAAALALSRTKSMPASLAAFSDGSDGNVIKRPPAGSKSAVAGVLHKWTNYGKGWRSRWFFLRNGVLSYAKIRRPENLNLLAPYDDVRLIGEISSNRIPRGEEKGGGRRKHQKAVGVVHLKIGSFRESKSDDRRFYISTATKTLHLRTNSKSDRGAWIQALASDRSISPQTSLNYNLSPVPSDLLVSTDRLKKRLIEEGISETLVKDCEQIMLAEFSEIQGQLQVLCEERYNLLDTIRQLEAANFEAEASGTNDGEFQLTKHDLSSEERGKYSECSTTESSDDIEKQEFEEEVSDEDEVSFYDTRDSFSENSADDGINSKAENCHYDDAETMPAKLQLQNRYSHIQRRKRLPDPVEKEKRVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDMEYSYLLDQAYEQGKQGNSLQRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPTLIACHCEGRGWKFWGDSNLQSKFSGRSIQLDPLGVLTLEFDDGEIFQWSKVTTNIYNLILGKVYCDHHGTMHIRGNRDYSCNLKFKEQSFLDRNPRQVHGYVEYANGEKVATLFGKWDDSMYYVNGHENVNSKSCDGTLLWKSNEPPQNLTRYNLTSFAITLNELTPGLKEMLPPTDSRLRPDQRHLENGEYDKANAEKLRLEQRQRISRKLQENGWKPRWFQREGEDGPFRIQIYGR 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4100755 4109067 + CcPI632755_01g004080.1 Cco01g0408 169270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0408 739 Gene3D - 685 735 - -
Cco01g0408 739 SMART PH_update 69 198 IPR001849 -
Cco01g0408 739 Pfam Pleckstrin homology domain 77 192 - -
Cco01g0408 739 ProSiteProfiles PH domain profile. 68 196 IPR001849 -
Cco01g0408 739 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 68 728 IPR000648 GO:0005829(PANTHER)|GO:0008289(InterPro)|GO:0015248(PANTHER)|GO:0016020(PANTHER)|GO:0032934(PANTHER)|GO:0043231(PANTHER)
Cco01g0408 739 SUPERFAMILY Oxysterol-binding protein-like 387 730 IPR037239 -
Cco01g0408 739 SUPERFAMILY PH domain-like 67 192 - -
Cco01g0408 739 Pfam Oxysterol-binding protein 392 728 IPR000648 GO:0008289(InterPro)
Cco01g0408 739 Gene3D - 64 198 IPR011993 -
Cco01g0408 739 Gene3D - 478 648 - -
Cco01g0408 739 FunFam Oxysterol-binding protein-related protein 2A 478 646 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0408 K20456 - - csv:101216432 1350.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0408 Cco-Chr1:4100755 Cco03g0951 Cco-Chr3:12355011 1.50E-222 dispersed
Cco01g0408 Cco-Chr1:4100755 Cco10g0290 Cco-Chr10:3374632 3.50E-296 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g512 . . . Bda08g00569 . . Bma07g01601 Bma14g00510 . . . . Car02g01309 . . . . Bhi11g00211 Tan01g2012 . . . . . . . . . . . . . . . . . Csa05g00404 Chy09g01108 . Blo03g00415 . Bda07g00005 Bda09g00095 Bpe08g01434 Bpe11g00265 . . . . . . . . . . Cpe13g00226 Bhi12g00422 . . . . . . Cla01g00377 Cam01g0396 Cec01g0388 Cco01g0408 Clacu01g0397 Cmu01g0378 Cre09g2134 Lsi09g00408 . Chy06g02027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88