Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0423 TGGTATGACGTAATCAGAAGCTCGAAGACGAGAGGGAAAAGAAAAATGGGGAGCAGAACAAATTTCTACAAGAATCCTTCCATCTCCTACAAGAAGGATTTGAATCTCTCCTCCGCTCTTCAAAACCTAAGAGCGTATAACATTGCTACCGGCAATGCTCCTCCGATCGATGTTCAACCACCTCCTGTCGTGAAGAAGAATGAGAATCGGAAACGGCAACGGGAGCCGGAATTATCTGGTAGTCCAAATTATGAGGTTAGAAATAGTGACGGCCCCATGTCTCATCAAGATTACATTGATTGGAGAAGAAAAGAAGCAAATAAATCTCAACCTTATGAGACACTTACGGAAGATGTTTTGGGAGCTTCCACCTTGGGTTTGAACTTGGTCGAATATGAAAGTGATGGGAGCACATCTTCAGAAAGTGCAGTAAAGCCAGATCATCAAAATTCCAGTCTCTTGAATGATAACAAGGAAGTTAAAAGCAAAACTGAGCAACGTTTTGCCATTGCGGGAGAACCTGTTTGTGTAGTATGTGGTAGATATGGAGAATACATATGTGATGAAACCAATGATGACATCTGCAGCATGGAGTGCAAATTGAAGCTTTTGGAAATTCTTAAACAGAGCGAGGAGTCCTCAAACTGTGAAGTGAAAGATGTTGCATTACCAGAAAGTAAATATATCCTGCCTTCCCCAGAGTTCGGGGAGGACACCTGGGATAATAAGAACCATCGCTGGTCCAAAAAGAAATCCAATCTTTGTACCTATGAATGCTGGAAATGTCAAAACCCAGGACACCTTGCTGAAGATTGTTTGGTGAAAACCAATAACCAGTTAATGCAACAAAAGACTTCCAATCCTGTACCAGGCGATCTCCTTGGAATATATAAAAGATGTTACCAGATAGGAAAGAATTTGTCAAATGCACTGTGCAATGAATGCAGCTGTTCATTTAGTTTGGCGACATGTCTTGATTGTAGCACTGTTTACTGTGACAGTGCAGGTCACTTAAATGAGCACATCCACACACACCCAACTCATGGACTATATTACTCACATAAACTCAAACGTCTTGTAAAATGCTGCAAATCAACATGCAGGGTGACTCACATCAAGGATCTTCTGGTCTGTCATTACTGTTTTGATAAAGCTTTCGACAAGTTCTATGATATGTATACTGCATCTTGGAACGGAGCTGGGCTTTCAATCATATCAGGTTCCATTTGCTGCGAAGATCATTTTGCGTGGCATCGAATGAACTGTTTTAACGCAGATGTAGAGGACACTGCCTATATCATCAATAGGAAAGCGAAAGAAGATAAAAAAGAAAAAAGAAATCCTCTATTCCGCCCCACGGCGCACCCTTTCCCCTTCTCCTCGCCCTTTCCCCTTCCCCCTGCCCGCCGACCTCAACTTCACCGGCCGACATCACCGCCGCCTTACGCCAGTGCGAATTATAATTTTAGTTTTTTAGAGTTGGTGATTATGGGAGGTCATGGAGGTTTAAATATTCTTCCCCAAAAGCGATGGAATGTGTACAACTATGAGAACAGAGAGAAAGTGCGGCGAGATGAAGAAGCTGCGGCCAAAGAAGAACAGCTTAAACGCGAGCAGGCTAGGAAACGGGATGCTGAGTTTCGTCTCGAGCAGCTTCGTACCGCACGGGGTTTAGCTCCAGTAATTGACACTGCAAAGCCAGTAGAAACAGACCTGAAACCTGGTCACATAAATCTATTTGAAGGCATCAAGATTTTTGACCCAGTTAAGGGTTCAGAAAATGGGGGAGTTGAAGATGGGTCTAAGAAGAGGATGAAGAAGGAAGAAGTGGAAAAAAGAGTAATCACACCTGAAGATGAGAAGTATAAGTTAGGTTATGGTGTTGCTGGAAAAGGAGTCAAGTTGCCATGGTACCTTGAGAGGCCCGACAAGGATGACACCGAGAGTGACGAAATTGATGGATTGTCAAGAGTAGGGAGTGGAAATGTAAAAAAGGGAGGAAAAAAGACCTTGGAAGAATTGAGGGCCGAGCGTCTGAAACGAGAGCTGAAGGAGAAGGGAAGGGAGCGTGCATTAATCGCAGAGAGAAGCTGGAAGAGTGGAACAGCTTCAAGGGAAGGAGATTCATCTTCCAGGAGGTGGAATTCCAGAAGGTAA 2157 43.63 WYDVIRSSKTRGKRKMGSRTNFYKNPSISYKKDLNLSSALQNLRAYNIATGNAPPIDVQPPPVVKKNENRKRQREPELSGSPNYEVRNSDGPMSHQDYIDWRRKEANKSQPYETLTEDVLGASTLGLNLVEYESDGSTSSESAVKPDHQNSSLLNDNKEVKSKTEQRFAIAGEPVCVVCGRYGEYICDETNDDICSMECKLKLLEILKQSEESSNCEVKDVALPESKYILPSPEFGEDTWDNKNHRWSKKKSNLCTYECWKCQNPGHLAEDCLVKTNNQLMQQKTSNPVPGDLLGIYKRCYQIGKNLSNALCNECSCSFSLATCLDCSTVYCDSAGHLNEHIHTHPTHGLYYSHKLKRLVKCCKSTCRVTHIKDLLVCHYCFDKAFDKFYDMYTASWNGAGLSIISGSICCEDHFAWHRMNCFNADVEDTAYIINRKAKEDKKEKRNPLFRPTAHPFPFSSPFPLPPARRPQLHRPTSPPPYASANYNFSFLELVIMGGHGGLNILPQKRWNVYNYENREKVRRDEEAAAKEEQLKREQARKRDAEFRLEQLRTARGLAPVIDTAKPVETDLKPGHINLFEGIKIFDPVKGSENGGVEDGSKKRMKKEEVEKRVITPEDEKYKLGYGVAGKGVKLPWYLERPDKDDTESDEIDGLSRVGSGNVKKGGKKTLEELRAERLKRELKEKGRERALIAERSWKSGTASREGDSSSRRWNSRR 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4231942 4242760 + CcPI632755_01g004230.1 Cco01g0423 169285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0423 718 MobiDBLite consensus disorder prediction 690 718 - -
Cco01g0423 718 Coils Coil 669 696 - -
Cco01g0423 718 MobiDBLite consensus disorder prediction 443 463 - -
Cco01g0423 718 Gene3D - 155 214 - -
Cco01g0423 718 MobiDBLite consensus disorder prediction 523 542 - -
Cco01g0423 718 Coils Coil 523 555 - -
Cco01g0423 718 MobiDBLite consensus disorder prediction 133 159 - -
Cco01g0423 718 MobiDBLite consensus disorder prediction 51 95 - -
Cco01g0423 718 MobiDBLite consensus disorder prediction 641 670 - -
Cco01g0423 718 Pfam HIT zinc finger 173 200 IPR007529 -
Cco01g0423 718 MobiDBLite consensus disorder prediction 1 20 - -
Cco01g0423 718 MobiDBLite consensus disorder prediction 133 151 - -
Cco01g0423 718 ProSiteProfiles Zinc finger CCHC-type profile. 259 272 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco01g0423 718 PANTHER CCHC-TYPE DOMAIN-CONTAINING PROTEIN 16 444 - -
Cco01g0423 718 SMART Cir_N_3 510 546 IPR019339 -
Cco01g0423 718 MobiDBLite consensus disorder prediction 64 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0423 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0423 Cco-Chr1:4231942 Cco05g1431 Cco-Chr5:16105936 1.40E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g530 . Blo03g00163 Bda06g00030 . . Bpe07g00174 . . . . . Cma15g01126 . Car15g01031 . . . . . . . . . . . . . . . . . . Cone12ag0379 . . . Csa05g00418 Chy09g01091 . . . . . . . . Bma12g00641 . . . . . . . . Cpe13g00230 Bhi12g00442 . . . . . Lcy12g1826 Cla01g00394 Cam01g0411 Cec01g0402 Cco01g0423 Clacu01g0412 Cmu01g0393 . . . . Cme09g01620
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010911 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 31