Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0429 ATGGCATTCCTTTTTCCCTCATTTTTCTTCTCCACTTTCTTTCTCCTATGCTTTTCCGCCGCCGCCAAGCACCGCCACCACTGGGTCGGACCCACCGGACACCGCCTCATCAAAGTGAATGTTAACGGCGGCTCCGATGAGTTTCTCTCCGTGCAAGCCGCCGTGGATGCAGTTCCCGATTACAATACCGTCAACACCGTCATCCGAATTAGCCCCGGATATTACGTGGAGAAGGTGGTGGTGCCGGCGACGAAGCCGTACATAACATTTGAAGGTGGAGGAAAAGAGACGACGGTGATAGAATGGCACGACCGGGCAGGTGACCGTGGTCCCAGCGGGCAGCAACTCCGTACTTATAGAACAGCCTCCGTTACCGTTTTTGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAAGAATACGGCACCGGCGCCGCTGCCCGGAATGCAAGGGTGGCAGGCGGCGGCGTTCCGAATCTCCGGCGACAAAGCCTACTTTTCCGGCTGCGGATTCTACGGCGCACAAGATACGCTTTGCGACGACGCTGGCCGCCATTACTTCAAAGAATGCTACATTGAAGGCTCCATAGACTTCATCTTTGGAAATGGGCGTTCCATGTATAAGGATTGTGAGCTGCACTCAATTGCCACCCGGTTTGGTTCCATAGCGGCCCAAGATAGAAACTCGCCGTCTGAGAAGACCGGGTTTGCTTTTCTCCGGTGCAAGGTGACCGGTTCAGGACCCGTGTACGTGGGCCGAGCCATGGGCCAGTACTCCAGAATCGTCTATGCATATACTTACTTTGGTGATGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACTGTATTTTTTGGAGTATACAAGTGCTGGGGGCCAGGGGCAAGTAAAGTAAAGGGAGTATCATGGGCTAGAGAATTGGAGTATGAAGAGGCCCATCCATTTCTTGCCAAAAGCTTTGTCAATGGCAGACACTGGATTGCACCCTCTGATGCTTAG 1020 53.24 MAFLFPSFFFSTFFLLCFSAAAKHRHHWVGPTGHRLIKVNVNGGSDEFLSVQAAVDAVPDYNTVNTVIRISPGYYVEKVVVPATKPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPSEKTGFAFLRCKVTGSGPVYVGRAMGQYSRIVYAYTYFGDVVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGASKVKGVSWARELEYEEAHPFLAKSFVNGRHWIAPSDA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4270606 4277722 + CcPI632755_01g004290.1 Cco01g0429 169291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0429 339 ProSitePatterns Pectinesterase signature 2. 192 201 IPR033131 -
Cco01g0429 339 SUPERFAMILY Pectin lyase-like 37 336 IPR011050 -
Cco01g0429 339 Gene3D - 35 338 IPR012334 -
Cco01g0429 339 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 335 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cco01g0429 339 Pfam Pectinesterase 42 330 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco01g0429 339 FunFam Pectinesterase 32 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0429 Cco-Chr1:4270606 Cco03g1665 Cco-Chr3:31286913 7.10E-87 dispersed
Cco01g0429 Cco-Chr1:4270606 Cco11g0442 Cco-Chr11:4642821 1.40E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0429 - - - 0.0