Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0436 ATGGTGAAGTTGGCCGTGGGCTCCGCCGCCGATTCATTCAGTGCGGCCTCTCTTAAAGCCTATCTCTCTGAATTCATCGCCACTCTCCTTTTCGTCTTCGCCGGCGTCGGCTCCGCCATCGCCTACGGTAAGTTAACGTCGGATGCGGCGTTGGATGCACCAGGTTTGGTGGCAGTGGCAGTGGCTCACGCATTTGCATTGTTCGTCGGTGTGTCGATGGCAGCGAACATCTCCGGCGGCCACCTAAACCCGGCGGTGACCTTTGGGTTGGCCATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATCGCCCAATTGCTTGGCTCCATTGTTGCCTGCCTCCTCCTTCAATTCGTTACCAACGGCAAGAGTATTCCGACCCACGGCGTGGCGGCGGGACTGGGAGCAATTGAAGGCGTAGTATTCGAGATAGTAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGACCCCAAAAAGGGTTCTCTTGGAACAATTGCCCCAATTGCTATCGGCTTCATTGTGGGTGCCAACATTCTCGCCGCCGGCCCATTTAGCGGTGGGTCCATGAACCCGGCCCGTTCCTTCGGCCCAGCTGTTGTCAGCGGAGACTTCTCTCAGATTTGGATCTATTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGCCTTATCTATGGCGACGTCTTTATTTCCTCTTATGCCCCTGTTCCTGTCTCTGGTGATTATGCTTAA 753 55.64 MVKLAVGSAADSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDAPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFISSYAPVPVSGDYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4350792 4353402 + CcPI632755_01g004360.1 Cco01g0436 169298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0436 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cco01g0436 250 PANTHER AQUAPORIN-8 3 239 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cco01g0436 250 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0436 250 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Cco01g0436 250 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0436 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0436 250 FunFam Probable aquaporin TIP1-1 2 248 - -
Cco01g0436 250 SUPERFAMILY Aquaporin-like 16 239 IPR023271 -
Cco01g0436 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0436 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0436 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0436 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0436 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0436 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0436 Cco-Chr1:4350792 Cco09g0180 Cco-Chr9:1649469 8.60E-98 dispersed
Cco01g0436 Cco-Chr1:4350792 Cco04g1150 Cco-Chr4:26865090 1.10E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0436 K09873 - csv:101203925 465.307