Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0442 ATGGAAGATGATGGAGGCGAGAGATCGAGCTTCGTGATCGGTCTGATCGAGAACAGAGCTAAGGAGGTTGGAGTTGCTGCATTTGACTTGAGGTCAGCCTCACTTCATCTTTCTCAATATATAGAGACCAGCAGCTCATACCAGAATACAAAAACTTTGCTGCATTTCTATGAACCAATGGTTATACTTGTTCCTCCAAACAAGCTCGCACCTGATGGCATGGTTGGAGTTTCAGTTTTGGTTGATAGGTTTTTTCCTACAGTGAAGAAGGTTGTAATGGCACGTGCTTGCTTTGATGACACAAAGGGTGCTGTTCTGATTAAGAATCTGGCAGCCAAGGAGCCTTCTGCTCTTGGGTTAGAAACTTATTACAAACAATACTATCTCTGTCTGGCTGCTGCTGCTGCTAGCATTAAGTGGATTGAAGCAGAGAAGGGGGTAATCGTGACCAATCACTCTTTATTGGTCACCTTCAATGGCTCATCTGATCACGTGAGCATTGATGCAACGAGCGTTCAGAATCTAGAAATTATTGAGCCACTTCACTCCAACCTATGGGGAACAAGCAACAAGAAGAGAAGTCTGTACAACATGCTCAAGACAACAAAAACAATAGGAGGGTCTAGACTTCTTCGTGCCAATCTATTGCAGCCGTTAAAAGATATTGAAACCATCAATGCCCGTCTGGATTGCCTGGATGAATTGATGAGCAATGAACAATTATTCTTTGGGCTTTCTCAAGCTCTCCGTAAATTTCCTAAGGAGACTGACAGAGTGCTTTGTCACTTCTGCTTCAAGCAAAAGAAAGTTACAAATGAAGTTTTGCGTGCTGATAATGCTAAAAAGAGCCAAAATTTGATATGTAGCATTATTCTGCTAAAAGCTGCCCTTGAGGCATTGCCTTTACTCTCAAAGGTACTTAAGGAAGCAAAGAGTTTTCTTCTTGCAAACATTTACAAATCTGTTTGTGAAAACGAAAAATTTGCAACCATTAGAAAGAGGATTGGAAAAGTGATTGATGAAGACGTTCTTCATGCAAGGGTTCCTTTTATTGCCCGAACTCAACAATGTTTTGCGGTTAAGGCTGGAATTGATGGACTGTTGGATATCGCAAGAAGGACGTTCTGTGATACTAGTGAAGCTATACATGATCTTGCTAACAAATATCGAGAGGAGTACAAGTTGCCCAATTTAAAACTGCCATTTAATAATAGGCAGGGGTTTTACTTGAGCATTCCTCATAAAGATGTACAAGGAAAGCTTCCTAGCAAGTTTATTCAGGTCTTGAAGCATGGGAACAATATACGATGCTCTACTCTGGAACTTGCTTCTCTGAATGTTAGAAACAAGTCTGCTGCAGGAGAATGCTATATACGAACAGAAATTTGCCTGGAAGGACTGGTAGATGCCATAAGAGAGGACGTCTCTATACTAACATTGCTCGCAGAAGTCTTGTGTCTCTTAGATATGATTGTCAATTCATTTGCACATGCAATATCAACAAAGCCTGTTGATCGATATACTAGGCCAAACTTTACAGATAATGGCCCGATGGCAATTGAAGCTGCAAGACACCCAATCCTAGAAAGTATACACAACGAATTTGTTGCTAACAGCATATTTCTATCGGAAGCATCCAACATGATAATTGTCATGGGTCCAAATATGAGTGGAAAAAGTACCTACCTTCAACAAATGTGCCTTCTAGTTATTCTTGCTCAAATCGGATGTTATGTTCCAGCACATTTCTCAACCTTGAGAGTTGTTGATCGTATATTCACACGAATGGGAACAGATGATAGTCTAGAGTCCAACTCCAGCACGTTCATGACAGAGATGAAGGAAACAGCTTTTTTAATGCAGAATGTCTCCCAAAGGAGTCTAGTTGTCGTGGATGAACTTGGGAGGGCAACTTCTTCCTCCGATGGATTTGCAATTGCATGGAGCTGCTGCGAACATCTTTTGTCACTGAAAGCCTATACCATATTTGCCACTCATATGGAGGGCCTATCAGAGCTAGCAACCATCTATCCAAACGTAAAAATTCTTCACTTCCATGTGGATATAAGGAACAACCGTTTGGATTTCAAGTTTCAATTAAAGGATGGAATAAGACATGTACCACACTATGGCCTTTTATTAGCAGAAGTGGCTGGATTGCCAAGCTCGGTTATTGAAACTGCAAGAGACATTACTTCCAGGATCATGGAGAAGGAAGAAAGACGGATGGAGATAAACTACTTGCAGTATCATCCTATCAGAATGGCCTACATTGTAGCTCAGCGTCTGATATGTTTGAAATACTCCAGCCACGATGAAGATTCAATACGAGAAGCATTACAAAATCTTAAAGAGGGCTACATTAGCGGCAGGCTATGA 2379 41.11 MEDDGGERSSFVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYEPMVILVPPNKLAPDGMVGVSVLVDRFFPTVKKVVMARACFDDTKGAVLIKNLAAKEPSALGLETYYKQYYLCLAAAAASIKWIEAEKGVIVTNHSLLVTFNGSSDHVSIDATSVQNLEIIEPLHSNLWGTSNKKRSLYNMLKTTKTIGGSRLLRANLLQPLKDIETINARLDCLDELMSNEQLFFGLSQALRKFPKETDRVLCHFCFKQKKVTNEVLRADNAKKSQNLICSIILLKAALEALPLLSKVLKEAKSFLLANIYKSVCENEKFATIRKRIGKVIDEDVLHARVPFIARTQQCFAVKAGIDGLLDIARRTFCDTSEAIHDLANKYREEYKLPNLKLPFNNRQGFYLSIPHKDVQGKLPSKFIQVLKHGNNIRCSTLELASLNVRNKSAAGECYIRTEICLEGLVDAIREDVSILTLLAEVLCLLDMIVNSFAHAISTKPVDRYTRPNFTDNGPMAIEAARHPILESIHNEFVANSIFLSEASNMIIVMGPNMSGKSTYLQQMCLLVILAQIGCYVPAHFSTLRVVDRIFTRMGTDDSLESNSSTFMTEMKETAFLMQNVSQRSLVVVDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFATHMEGLSELATIYPNVKILHFHVDIRNNRLDFKFQLKDGIRHVPHYGLLLAEVAGLPSSVIETARDITSRIMEKEERRMEINYLQYHPIRMAYIVAQRLICLKYSSHDEDSIREALQNLKEGYISGRL 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4396978 4406368 + CcPI632755_01g004420.1 Cco01g0442 169304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0442 792 SMART mutATP5 546 733 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco01g0442 792 FunFam DNA mismatch repair protein MSH4 164 335 - -
Cco01g0442 792 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 734 IPR027417 -
Cco01g0442 792 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 22 745 IPR045076 GO:0003690(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006298(InterPro)|GO:0007131(PANTHER)|GO:0030983(InterPro)|GO:0140664(InterPro)
Cco01g0442 792 Gene3D MutS, connector domain 3 157 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco01g0442 792 Gene3D - 336 470 - -
Cco01g0442 792 Gene3D - 164 335 - -
Cco01g0442 792 SMART DNAend 190 531 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco01g0442 792 FunFam DNA mismatch repair protein MSH4 4 156 - -
Cco01g0442 792 FunFam DNA mismatch repair protein MSH4 508 789 - -
Cco01g0442 792 PIRSF MSH2 7 785 IPR011184 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco01g0442 792 FunFam DNA mismatch repair protein MSH4 336 470 - -
Cco01g0442 792 Pfam MutS domain V 549 735 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco01g0442 792 Pfam MutS family domain IV 363 452 IPR007861 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco01g0442 792 Gene3D - 508 788 IPR027417 -
Cco01g0442 792 Pfam MutS domain III 171 492 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco01g0442 792 SUPERFAMILY DNA repair protein MutS, domain III 168 496 IPR036187 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0442 K08740 - - csv:101210638 1448.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0442 Cco-Chr1:4396978 Cco06g1698 Cco-Chr6:27533081 6.20E-49 dispersed
Cco01g0442 Cco-Chr1:4396978 Cco05g0964 Cco-Chr5:8419826 5.10E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007404 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 1 1 1 0 33