Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0464 | ATGTACCAGAGCACTAAAACAGAGTCCGATTTTGGTTTTCTAGACCCAATTCGCCGCCATTTATTGGGCGAATCGGAGATTTCCGCCGCCAACGCCGCCGCTCCCGGCGGCAGACCCACTCCCGTTTTCAGTCGGAGTGATAGTTTCAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGCGATTTGCCTCTCAAGGTTGACGACTCGGAAGATATGATGCTTGCCGCTGTTCTCCGAGATGCCGTCGGTGCCGGATGGGTTCCGTCGCTTGGAAGCTGCGATTTTGGGTTTTCGACGGTGAAATCAGAGCCGGAGGTGCTTCCGGTGGGTTACCCGGTGGTGGTACCGAATGTGACGGTGAAGCCAACTGTGGTACCGGCGAAAGGGAAGCATTATAGAGGAGTGCGGCAACGGCCGTGGGGGAAATTCGCAGCCGAGATTCGAGACCCGGCGAAAAATGGTGCTAGAGTTTGGCTTGGAACTTATGAGACGGCGGAGGATGCGGCGTTAGCTTATGATCGGGCGGCTTATCGAATGCGAGGCTCAAGGGCTCTGCTAAATTTTCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCGGTTAGGGTCACGTCGAAGCGATCGTCACCGGAGGTTTCATCGTCGCCGAAGCGGCGGAAGAAAGTCGGCTCCGCCGTAGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGGCAGCTGTTTGTAAGCCAATGCCAACATTTAGCCAATAATTATAAAAAGCTCTTTTAA | 789 | 54.12 | MYQSTKTESDFGFLDPIRRHLLGESEISAANAAAPGGRPTPVFSRSDSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGAGWVPSLGSCDFGFSTVKSEPEVLPVGYPVVVPNVTVKPTVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSSSPKRRKKVGSAVEGGGVQVEQQVASFTHGGQLFVSQCQHLANNYKKLF | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4553458 | 4554246 | + | CcPI632755_01g004640.1 | Cco01g0464 | 169326 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0464 | 262 | Gene3D | AP2/ERF domain | 131 | 193 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0464 | 262 | PRINTS | Ethylene responsive element binding protein signature | 133 | 144 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0464 | 262 | PRINTS | Ethylene responsive element binding protein signature | 156 | 172 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0464 | 262 | SMART | rav1_2 | 132 | 196 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0464 | 262 | ProSiteProfiles | AP2/ERF domain profile. | 132 | 190 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0464 | 262 | CDD | AP2 | 131 | 190 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0464 | 262 | SUPERFAMILY | DNA-binding domain | 132 | 192 | IPR016177 | GO:0003677(InterPro) | |
Cco01g0464 | 262 | Pfam | AP2 domain | 132 | 183 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco01g0464 | 262 | MobiDBLite | consensus disorder prediction | 197 | 227 | - | - | |
Cco01g0464 | 262 | FunFam | Ethylene-responsive transcription factor 2 | 131 | 191 | - | - | |
Cco01g0464 | 262 | PANTHER | DNA-BINDING DOMAIN | 114 | 219 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0464 | Cco-Chr1:4553458 | Cco07g1775 | Cco-Chr7:31915453 | 4.60E-33 | dispersed | |
Cco01g0464 | Cco-Chr1:4553458 | Cco10g0242 | Cco-Chr10:2569187 | 2.20E-83 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58574 | PF00847 | AP2 | 9.90E-15 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0464 | K09286 | - | csv:101221583 | 394.43 |