Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0464 ATGTACCAGAGCACTAAAACAGAGTCCGATTTTGGTTTTCTAGACCCAATTCGCCGCCATTTATTGGGCGAATCGGAGATTTCCGCCGCCAACGCCGCCGCTCCCGGCGGCAGACCCACTCCCGTTTTCAGTCGGAGTGATAGTTTCAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGCGATTTGCCTCTCAAGGTTGACGACTCGGAAGATATGATGCTTGCCGCTGTTCTCCGAGATGCCGTCGGTGCCGGATGGGTTCCGTCGCTTGGAAGCTGCGATTTTGGGTTTTCGACGGTGAAATCAGAGCCGGAGGTGCTTCCGGTGGGTTACCCGGTGGTGGTACCGAATGTGACGGTGAAGCCAACTGTGGTACCGGCGAAAGGGAAGCATTATAGAGGAGTGCGGCAACGGCCGTGGGGGAAATTCGCAGCCGAGATTCGAGACCCGGCGAAAAATGGTGCTAGAGTTTGGCTTGGAACTTATGAGACGGCGGAGGATGCGGCGTTAGCTTATGATCGGGCGGCTTATCGAATGCGAGGCTCAAGGGCTCTGCTAAATTTTCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCGGTTAGGGTCACGTCGAAGCGATCGTCACCGGAGGTTTCATCGTCGCCGAAGCGGCGGAAGAAAGTCGGCTCCGCCGTAGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGGCAGCTGTTTGTAAGCCAATGCCAACATTTAGCCAATAATTATAAAAAGCTCTTTTAA 789 54.12 MYQSTKTESDFGFLDPIRRHLLGESEISAANAAAPGGRPTPVFSRSDSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGAGWVPSLGSCDFGFSTVKSEPEVLPVGYPVVVPNVTVKPTVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSSSPKRRKKVGSAVEGGGVQVEQQVASFTHGGQLFVSQCQHLANNYKKLF 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4553458 4554246 + CcPI632755_01g004640.1 Cco01g0464 169326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0464 262 Gene3D AP2/ERF domain 131 193 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0464 262 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0464 262 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0464 262 SMART rav1_2 132 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0464 262 ProSiteProfiles AP2/ERF domain profile. 132 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0464 262 CDD AP2 131 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0464 262 SUPERFAMILY DNA-binding domain 132 192 IPR016177 GO:0003677(InterPro)
Cco01g0464 262 Pfam AP2 domain 132 183 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco01g0464 262 MobiDBLite consensus disorder prediction 197 227 - -
Cco01g0464 262 FunFam Ethylene-responsive transcription factor 2 131 191 - -
Cco01g0464 262 PANTHER DNA-BINDING DOMAIN 114 219 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0464 Cco-Chr1:4553458 Cco07g1775 Cco-Chr7:31915453 4.60E-33 dispersed
Cco01g0464 Cco-Chr1:4553458 Cco10g0242 Cco-Chr10:2569187 2.20E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58574 PF00847 AP2 9.90E-15 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0464 K09286 - csv:101221583 394.43