Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0470 ATGCAAAATGCTCCGCTTTTACTGCAATTCCCCATTTTGCCCTCCCCCTTCCCACTCTTCTCTCTTTCACTTCCTTCTCCCACTGCTCCTTCCATTCCATTTCTTAGCTCAATAATCCGTAGACGAGTGAGTGGCGAAAACTGCGGCGTTTCCGTTCTTCGAAAAGGAGTTTGTCTTAGGGCAATGCCTTCTACTGGCGGTGGCGACGGCGACGTTAATGGTGGTGCTTTCTCCGGCTTCAGTCTCACTGAGTCCTCGTTCTTGGCCTCCTTAATGCCTAAGAAGGAAATTGCTGCTGATCGCTTCATCGAGGCTAATCCTGAGTTCGATGGCCGTGGCGTTCTCATTGCGATTTTTGATAGCGGTGTTGACCCTGCTGCTGCGGGATTACAAGTGACGTCGGATGGAAAGCCTAAAATATTGGATATTCTTGATTGTACGGGGAGCGGTGATGTTGATATCTCGAAGGTGGTGAAGGCCGATGCAGACGGTTGCATTATTGGAGCTTCAGGGGCTTCGTTGGTTGTCAATTCTTCGTGGATGAACCCTTCTGGTGAGTGGCATGTGGGCTATAAATTTGTTTATGAGTTATATACAGACACATTGACTTCACGTTTGAAGAGAGAGAGAAAGAAGGATTGGGATGAAAAGAACCAGGAGGAGATTGCCAAGGCTGTTAAGGTTCTTGATGACTTTGATCAGAAACACACCAAGATGGAGGACCCAAATCTGAAAAGGGTTCGGGAGGACCTCCAACACCAAGTTGATATTCTTAAAAAACAAGCTGATTGCTATGATGATAAGGGGCCAATCATTGATGCTGTTGTTTGGCACGATGGAGAAGTATGGAGGGTTGCTCTTGACACACAAAGCCTCGAGGACAAGCCTACCTTGGGAAAACTTGCCAACTTTGTACCACTAACAAATTATAAGATTGAAAGAAAGTTTGGCGTGTTTAGCAAGTTGGATGCTTGTACATTTGTTGTTAATGTGTATGATGAGGGAAATATCTTAAGTATAGTTACAGATTGCTCCCCTCATGGTACTCATGTTGCTGGTATTGCTGCTGCTTTCCACCCAAAGGAACCCTTGTTGAATGGAGTTGCTCCAGGTGCACAACTGATATCTTGTAAAATTGGAGACACACGTTTAGGGTCAATGGAGACTGGAACCGGGCTTACTCGAGCATTGATAGCAGCTGTGGAGCATAAATGCGATCTCATAAATATGAGTTATGGTGAGCCAACATTACTTCCAGATTATGGTCGCTTTATTGATCTCGTTAATGAGGCGGTAAACAAGTACCGGTTAATATTTGTGAGCAGTGCTGGTAATAGTGGGCCAGCTTTGAATACTGTAGGTGCTCCTGGTGGTACGAGTTCAAGCATTATTGGAGTTGGCGCTTATGTTTCTCCATCAATGGCTGCTGGTGCTCATTGTGTGGTTGAGGCTCCCAGTGAAGGGCTTGAATATACTTGGTCAAGTCGTGGACCAACAGCAGATGGAGATCTTGGTGTTAGTATAAGTGCTCCTGGTGCTGCCGTTGCTCCTGTTCCTACATGGACCCTTCAAAGACGAATGCTTATGAATGGAACCTCTATGGCATCTCCCTCTGCCTGTGGGGGCATTGCATTACTCATTAGTGCAATGAAGGCTGAGAACATTACTGTGAGCCCATATCTTGTGAGGAAGGCTCTTGAGAATACGACCATTCCGGTAGGTTGCTTACCGGAAGATAAATTATCCACTGGACAGGGGCTCATGCAAGTTGACAAGGCATATGAATATATAAGGAAGTCCCACAATGTTCCATATGTTTGGTATAAAGTGAAGATTAATCAATCTGGAAAATTATCTCCCACCACACGGGGAATTTACTTGAGAGAGGCTAGTGCCTGCCGTCAACTTTCTGAGTGGACAGTACAAATTGAACCCCAGTTTCACGAAGATGCGAATAACTTAGAAGAGTTGGTCCCTTTTGAGGAGTGTATCGCGTTGCATTCCAGTGAAAAAACAGTTGTCACTGTTCCTGATTATTTACTTCTCACACATAATGGACGCAGCTTCAACGTAGTGGTTGATCCTTCCAATCTTAGTGATGGCCTGCACTATTATGAACTGTATGGTGTTGATTGCAAGGCTCCATGGCGGGGTCCTCTTTTCAGAATCCCAGTAACTATAACAAAGCCGGTAGTTGTGGTGGATCGCCCTCCAATAGTTTCTTTTCCAAGAATGTCGTTTCTACCAGGCCATATAGAGCGGAGGTTCATAGAGGTACCACGTGGTGCTAGTTGGGTTGAAGCAACCATACAAACTACAGGATTTGACACAACGAGGAAATTTTTTATTGACACTGTCCAGATTTTGCCCTTGAAAAGGCCTTTGAAGTGGGAGAGCGTGGTAACATTCTCTTCTCCTGCTTCCAAAAGTTTTTGCTTTCCTGTTGTGGGTGGCCAGACTATGGAATTAGCTATTGCTCAATTTTGGTCAAGTGGAATTGGAAGTAGGGAATCATCACTTGTAGATTTTGAGGTAACATTTCATGGGGTTAGTACCAATAAAGATGAAATAGTGCTTGATGGAAGTGAAGCGCCTGTTAGAATTGATGCTGAAGCCTTGTTGGCATCAGAAAAACTTGCTCCTGCTGCCATCCTGAACAAGATAAAAGTTCCATATCGGCCATGTGAAGCAAAACTTTGCTCACTGACTACGAATCGGGACAGATTGCCTTGTGGGAAACAGATTTTGTCACTGACCCTAACTTACAAGTTCAAATTAGAAGATGTTGCTGAAGTGAAACCTGTTATTCCATTGTTTAATGACCGCATATATGACAACAAATTTGAGTCTCAATTTTATATGATCTCTGACGCAAATAAGCGTATTTATGCTACGGGTGATGCATACCCAGAGTTTAAAAAACTTCCCAAGGGAGAATACAATTTACAGCTACATATAAGGCATGAGGACGTGCAATGTTTGGAAAAAATGAAGCAGTTGGTGGTGTTTATAGAAAGAAAATTGGAGGAGAAGGATACTATTAAATTGAATTTTTTCTCTCAACCCGATGGTCCTATGATGGGGAATGCTGCTTACAAATCCTCAGTTTTAGTTCCTGGGAAAAAAGAAGCATTCTATTTAGGCCCACCATCAAAAGATAAGTTTCCTAAGAATTCTCCTCAAGGATCGGTTCTCTTGGGAGCAATCTCATATGCAAAACTAGGTATTGTTAGTTCAAGTGACAAGGAAAGTTCACGGAAAATGCCTGCATATTTTCAAATCTCCTGCATAGTGCCACCAAATAAGCCCGATGAGGACAAGGGTAAAGGTTCTTCTCCAGCCTCAACAAAGACAATGTCTGAGCGTCTAATAGAAGAGGTGCGTGATGCGAAGATCAAATTTCTTTCAAGCCTAAAACCAGAAAGCAATGAAGAGTTTTCAGAATGGAAGAAATTGTGCTCATCCCTTAAGAGTGAATATCCAAACTACACTCCGCTGCTTTCAAAAGTATTGGAAGGTTTGGTTTCTCAGAGAAATATTGAGGACAGAAGCTGCCATGATGAAGAGGTCATTGATGCTGCAAATGAGATAGTTGATAGCATAGACAGAGATGAGCTGGCCAAGTATTTTGCAGTGAAAAATGACCCAGAAGATGAAGACGTGGAGAAAATCAAGAAGAAGATGGAGGCTACCCGTGATCAATTGGCAGAGGCGCTATACCAAAAAGGGATAGCCTTGGCAGAATCGGATTCTTCAAAG 3759 43.47 MQNAPLLLQFPILPSPFPLFSLSLPSPTAPSIPFLSSIIRRRVSGENCGVSVLRKGVCLRAMPSTGGGDGDVNGGAFSGFSLTESSFLASLMPKKEIAADRFIEANPEFDGRGVLIAIFDSGVDPAAAGLQVTSDGKPKILDILDCTGSGDVDISKVVKADADGCIIGASGASLVVNSSWMNPSGEWHVGYKFVYELYTDTLTSRLKRERKKDWDEKNQEEIAKAVKVLDDFDQKHTKMEDPNLKRVREDLQHQVDILKKQADCYDDKGPIIDAVVWHDGEVWRVALDTQSLEDKPTLGKLANFVPLTNYKIERKFGVFSKLDACTFVVNVYDEGNILSIVTDCSPHGTHVAGIAAAFHPKEPLLNGVAPGAQLISCKIGDTRLGSMETGTGLTRALIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKYRLIFVSSAGNSGPALNTVGAPGGTSSSIIGVGAYVSPSMAAGAHCVVEAPSEGLEYTWSSRGPTADGDLGVSISAPGAAVAPVPTWTLQRRMLMNGTSMASPSACGGIALLISAMKAENITVSPYLVRKALENTTIPVGCLPEDKLSTGQGLMQVDKAYEYIRKSHNVPYVWYKVKINQSGKLSPTTRGIYLREASACRQLSEWTVQIEPQFHEDANNLEELVPFEECIALHSSEKTVVTVPDYLLLTHNGRSFNVVVDPSNLSDGLHYYELYGVDCKAPWRGPLFRIPVTITKPVVVVDRPPIVSFPRMSFLPGHIERRFIEVPRGASWVEATIQTTGFDTTRKFFIDTVQILPLKRPLKWESVVTFSSPASKSFCFPVVGGQTMELAIAQFWSSGIGSRESSLVDFEVTFHGVSTNKDEIVLDGSEAPVRIDAEALLASEKLAPAAILNKIKVPYRPCEAKLCSLTTNRDRLPCGKQILSLTLTYKFKLEDVAEVKPVIPLFNDRIYDNKFESQFYMISDANKRIYATGDAYPEFKKLPKGEYNLQLHIRHEDVQCLEKMKQLVVFIERKLEEKDTIKLNFFSQPDGPMMGNAAYKSSVLVPGKKEAFYLGPPSKDKFPKNSPQGSVLLGAISYAKLGIVSSSDKESSRKMPAYFQISCIVPPNKPDEDKGKGSSPASTKTMSERLIEEVRDAKIKFLSSLKPESNEEFSEWKKLCSSLKSEYPNYTPLLSKVLEGLVSQRNIEDRSCHDEEVIDAANEIVDSIDRDELAKYFAVKNDPEDEDVEKIKKKMEATRDQLAEALYQKGIALAESDSSK 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4590514 4611131 - CcPI632755_01g004700.1 Cco01g0470 169332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0470 1253 Pfam Subtilase family 111 570 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco01g0470 1253 FunFam Tripeptidyl-peptidase 2 607 738 - -
Cco01g0470 1253 MobiDBLite consensus disorder prediction 1101 1120 - -
Cco01g0470 1253 Gene3D - 607 739 IPR046940 -
Cco01g0470 1253 Pfam Tripeptidyl-peptidase II, first Ig-like domain 621 727 IPR048383 -
Cco01g0470 1253 Coils Coil 1221 1241 - -
Cco01g0470 1253 ProSiteProfiles Serine proteases, subtilase domain profile. 85 594 - -
Cco01g0470 1253 FunFam tripeptidyl-peptidase 2 isoform X1 94 179 - -
Cco01g0470 1253 Pfam Tripeptidyl peptidase II 873 1058 IPR022229 -
Cco01g0470 1253 PANTHER PEPTIDASE S8 120 1032 IPR050131 GO:0005829(PANTHER)|GO:0008240(PANTHER)
Cco01g0470 1253 SUPERFAMILY Subtilisin-like 97 608 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco01g0470 1253 Pfam TPPII, galactose-binding domain-like 747 831 IPR048384 -
Cco01g0470 1253 Gene3D - 210 267 - -
Cco01g0470 1253 CDD Peptidases_S8_Tripeptidyl_Aminopeptidase_II 91 573 IPR034051 GO:0006508(InterPro)|GO:0008240(InterPro)
Cco01g0470 1253 Gene3D - 1117 1253 IPR046939 -
Cco01g0470 1253 PRINTS Subtilisin serine protease family (S8) signature 111 130 IPR015500 -
Cco01g0470 1253 PRINTS Subtilisin serine protease family (S8) signature 530 546 IPR015500 -
Cco01g0470 1253 PRINTS Subtilisin serine protease family (S8) signature 343 356 IPR015500 -
Cco01g0470 1253 ProSitePatterns Serine proteases, subtilase family, histidine active site. 347 357 IPR022398 -
Cco01g0470 1253 ProSitePatterns Serine proteases, subtilase family, serine active site. 531 541 IPR023828 -
Cco01g0470 1253 FunFam Tripeptidyl-peptidase 2 homolog 271 604 - -
Cco01g0470 1253 Coils Coil 248 268 - -
Cco01g0470 1253 Gene3D Peptidase S8/S53 domain 94 184 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco01g0470 1253 Gene3D Peptidase S8/S53 domain 272 604 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0470 K01280 - - csv:101220162 2296.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g697 Blo06g01128 . . . . . . . . . . Cma15g01096 . Car15g01007 . . . . . . . . . . Cla01g00436 . . Cco01g0470 . . Cre09g2075 . Cone5ag0871 . . . . . . . . . Bda15g00725 . . Bma08g00301 . . . Cmo15g01154 . . . . . Cpe13g00255 Bhi12g00508 . . . . . Lcy12g0027 . . . . . . . . . . Cme09g01554
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005749 1 1 2 3 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 36