Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0480 | ATGCCTTCATGGTGGGGGAAGTCATCATCAAAAGAAGTAAAGAAGAGCAAGGAAAGTTTAATCGACACATTGCAGAGAAAACTTAGAACTACTGATGGTAAAACAAACAGCAAATCAGGAGAGTCTCCAAGAAATTGTAATGACACAATTTCTGAGCAGGGATCTCGATCTCCTATTATTTCAAGATCAGTTTCCCCTTCCAGACAAGTTTCAAGATGTCAAAGCTTTTCTGAAAGGCCACAAGCACAACCTCTTCCTCTTCCTGGTTTGCAGCCACCAATTGTAGGTCGTACAGACTCTGGGATTAGTATTTCACCAAAACCAAGATCTGAAAGGGGCTCCAAGCCATCATCATTTCTACCACTTCCAAGACCAGCATGCATTCGTGGGAGGCCAAACCATGCAGATTTAGATGCAGATGTTGGTGTTGGCTCAGTGTCCAGTGAGAGCTCAACTGATAGCACGGATCTTTCGGATTCACGCCATCGTAGTCCTCAGGCAACTGACTATGATCTTGGGACTAAAACTGCTGCAGGCAGTCCTTCCAGTGTCATTCTCAAGGATCAGTCTTCTACTGTCACCCAACCAAGTTCGCAGAAGGCCAGCAAACCGGCAAATATCTCATTGAGCAACCACATTTTCTCAACATCACCCAAGCGGAGGCCTTTAAGCAGCCATGTTCCAAATCTGCAAGTTCCATATCATGGGAATTCCTGCATTCCTCCAGAAAGTTCAATGTCAAGTCCTTCTAGAAGTCCCATAAGGGCATTTAGCACAGAGCAAGTTATAAATAATGCTGTCAGTGCTGGGAAGCTCTATATGGATGTCACATTTCCTGGGTCAGGCCATTGTTCCAGTCCTGGTTCTGGTTACAATTCTGGCCATAATTCTATGGGTGGGGATTTGTCAGGGCAGTTATTTTTACAACAAAGTCGGGGTAGCCCTGAATATTCTCCAGCACCCAGTCCCAGAATGACCAGCCCTGGCCCAAGCTCCAGAGTCCATAGTGGTGCAGTGACCCCAATTCATCCTAGGGCGGGAGGTATACCCACTGAGTCGCAGACAAGCTGGCCTGATGAGAAGCAAACTCACCGCTTGCCTCTACCTCCGGTTTCAATTTCCAATGCTCCCTTTTCTCATTCCAATTCAGCAGCAACGTCTCCCTCTGTTCCAAGAAGTCCTGGAAGGGCTGATAATCCAGCCAGTCCAGGCTCCCGTTGGAAAAAGGGGAAGCTTTTGGGTAGGGGTACTTTTGGTCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGGAATGTGTGCAATGAAGGAAGTTACATTATTTTCAGATGATGCAAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAAGAAATTACCTTGTTGAGTCGTTTACAGCATCCAAATATTGTGCAGTACTATGGATCTGAAACGGTTGGCGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGAGAATCAGCACTTCGTATTTATACTAAGCAAATATTGTCTGGGCTTGCATATTTACATGCTACAAATACTGTTCACAGGGATATCAAAGGAGCAAATCTACTTGTCGATCCCACTGGTGTAGTTAAGTTGGCTGACTTTGGGATGGCAAAACATATCACTGGGCAATCATGCCCTTTGTCTTTTAAAGGAAGCCCGTACTGGATGGCACCTGAGGTTATTAAAAACTCAAATGGTTGCAACCTTGCGGTAGATATTTGGAGTCTTGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGAGTCAATATGAGGGAGTCGCTGCAATGTTCAAGATTGGCAACAGCAAAGAACTTCCTGAAATCCCGGATCACCTTTCACATGATGGAAAAGACTTTGTTAGACAATGTTTGCAACGGAATCCTGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAACATCCTTTTGTCAAAGATGTAACAACTCATGAAAGACCGATTTTAGGTTCTGAACATTCAGATCCAACTCCAGGACTTACAAATGGAGTAAGAAGTCTGGGTATTGAGCAAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCATTCATCTAGACTCACAACAGCTGCTTTCCATTCCAGTGATTTCCATATTCCAAGGAACTTATCATGTCCTGTTTCGCCCATCGGAAGCCCTCTGGTACACTCACGGTCGCCACAACATCCCAGTGGAAGAATGTCTCCGTCACCCATCTCCAGCCCTCGTAATATGTCGGGTGCATCCACTCCTCTCACGGGAGGAAGCGGTGCCATTCCACACCAGCATCTCAAGCAATCACTGTACCTACAGGAGGGTTTTGGGAGCTTGCCAAAGCCTTCAATAGCACCCTATAGTAATGGCCCTTCCTATCCCGATAGGAACCCTGACATCTTTCAGGGGATTCAGCCAGGCTCTCACATCTTCTCTGAGCTGGTACACCATGAAACTGATTTTCTGGGTAAGCAGTTTGGAAAGCCTGCCTGGGAATTGTATGACGGGCAGGCGGTCTTGGCTGATCGTGTTTCTAGGCAGCTGCTGAGTGATCACATAACAACTCCCTCCCTGGATTTAAGTCCAAGCTCTCTTTTGACCAACCGCAAATAG | 2670 | 45.92 | MPSWWGKSSSKEVKKSKESLIDTLQRKLRTTDGKTNSKSGESPRNCNDTISEQGSRSPIISRSVSPSRQVSRCQSFSERPQAQPLPLPGLQPPIVGRTDSGISISPKPRSERGSKPSSFLPLPRPACIRGRPNHADLDADVGVGSVSSESSTDSTDLSDSRHRSPQATDYDLGTKTAAGSPSSVILKDQSSTVTQPSSQKASKPANISLSNHIFSTSPKRRPLSSHVPNLQVPYHGNSCIPPESSMSSPSRSPIRAFSTEQVINNAVSAGKLYMDVTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTESQTSWPDEKQTHRLPLPPVSISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGGMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLQHPNIVQYYGSETVGDRLYIYLEYVSGGSIYKLLQEYGQLGESALRIYTKQILSGLAYLHATNTVHRDIKGANLLVDPTGVVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPEIPDHLSHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKDVTTHERPILGSEHSDPTPGLTNGVRSLGIEQGRNPSFLDSDRSAAHSSRLTTAAFHSSDFHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSLYLQEGFGSLPKPSIAPYSNGPSYPDRNPDIFQGIQPGSHIFSELVHHETDFLGKQFGKPAWELYDGQAVLADRVSRQLLSDHITTPSLDLSPSSLLTNRK | 889 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4710016 | 4714638 | + | CcPI632755_01g004800.1 | Cco01g0480 | 169342 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0480 | 889 | SUPERFAMILY | Protein kinase-like (PK-like) | 405 | 754 | IPR011009 | - | |
Cco01g0480 | 889 | ProSiteProfiles | Protein kinase domain profile. | 407 | 663 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0480 | 889 | MobiDBLite | consensus disorder prediction | 35 | 81 | - | - | |
Cco01g0480 | 889 | ProSitePatterns | Protein kinases ATP-binding region signature. | 413 | 436 | IPR017441 | GO:0005524(InterPro) | |
Cco01g0480 | 889 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 40 | 668 | IPR050538 | - | |
Cco01g0480 | 889 | FunFam | Mitogen-activated protein kinase kinase kinase | 405 | 686 | - | - | |
Cco01g0480 | 889 | SMART | serkin_6 | 407 | 663 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0480 | 889 | MobiDBLite | consensus disorder prediction | 736 | 781 | - | - | |
Cco01g0480 | 889 | MobiDBLite | consensus disorder prediction | 742 | 777 | - | - | |
Cco01g0480 | 889 | MobiDBLite | consensus disorder prediction | 673 | 708 | - | - | |
Cco01g0480 | 889 | MobiDBLite | consensus disorder prediction | 282 | 410 | - | - | |
Cco01g0480 | 889 | Pfam | Protein kinase domain | 408 | 663 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0480 | 889 | MobiDBLite | consensus disorder prediction | 282 | 317 | - | - | |
Cco01g0480 | 889 | CDD | STKc_MEKK1_plant | 406 | 663 | - | - | |
Cco01g0480 | 889 | MobiDBLite | consensus disorder prediction | 169 | 208 | - | - | |
Cco01g0480 | 889 | MobiDBLite | consensus disorder prediction | 1 | 208 | - | - | |
Cco01g0480 | 889 | MobiDBLite | consensus disorder prediction | 10 | 34 | - | - | |
Cco01g0480 | 889 | Gene3D | Transferase(Phosphotransferase) domain 1 | 405 | 681 | - | - | |
Cco01g0480 | 889 | MobiDBLite | consensus disorder prediction | 374 | 393 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0480 | Cco-Chr1:4710016 | Cco04g1421 | Cco-Chr4:29627459 | 8.90E-97 | dispersed | |
Cco04g1293 | Cco-Chr4:28210022 | Cco01g0480 | Cco-Chr1:4710016 | 1.30E-120 | transposed | |
Cco01g0480 | Cco-Chr1:4710016 | Cco05g0981 | Cco-Chr5:8613008 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86498 | PF00069 | Pkinase | 5.40E-71 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0480 | K20717 | - | csv:101222716 | 1619.75 |