Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0483 ATGGTGATTTATCGTTCCTCTGCTGCACTACAGTTTAGAGAGTGTTCTTTTGAGGCACAGCGAACTTGGGCATCTCTAGAGGGAAATTCTGCCTGTGAAGGGAGCTTTGATGCTAAGAGTTGCATAATTATGGAGGGGATGGAAGATGAATCCAATAGAAATCTTATGTTGCTGCCTTCCCCTTCTCTAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGATAAGTTTCTACCTGAGGGCGTCACTGATTTCAAGTTGCTACACGTCATCCCAAGGATTAGTAGCGTTCCAACGCCAATGGGAAACTCAATTCCAATTTCACAAGTTCGTGATGATGTCGCTGCGGCTTACAGGAAAGAAATCGGGTGGCAGACAAGTGAAAAACTTCTTCCATATAAGAAGATGTTTTCTGAGAGAAAGGTTCATCTTGATATTGCAACTCTTGAAGCAGATGATGTGGCAAATACAATAATGGAAGAGGTTACAAAATGTTCAATCAACAAGCTTGTTATAGGAGTTTCTTCACAGGGATTATTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAAATATTGTACAGTCTATGCTATTTCAAAAGGAAAACTAGCCTCAATACGGCCGCCTAATATTGTACAGTCTATGCTTTTTCAAAAGGAAAAAGATGATGCGAGTGAAGCAAGTTCTGCGAATAGCTACTCAAGCCATACATCTGGCTCCCTTACAGATAGCAGTTCAAGCTTAGTTACCTCCTACTCTCATTTCCCTTCTCCTTCCTCTTCCTTACCATTACAACGATTTCAAGCTCTTTCAACCATTAATCAATCTCTTCTTACGACAAAACCGAGCCTCATTAAAGTCAACCATTCTAGATGTCAATCCGTTGATATTGAGAATCAGGTGGATGGAGTTCATTCTTCTTCCTATGCTTCCGATTGTGCACAAACATTGAGTCAAACCTCTAGTTGTAAAAGCTTGCCAGCAGATTACCAGTCCTGGGTTACTGATGAAGCTTCATCCACAGGCGCGTTCAATGATTATCCTTCATGTGAAAGTCAGGCGGATGTGAGCTTTGCGCTTGAAAAGTTGAGAATCGAACTAAGACATGCGAGAGGAATGTATGCAATTGCTCAACGTGAGACAATTGATGCCTCTCGAAAGCTGAACCATCTAAGTAAGCAACGAACAGAGGAAGCTAGGAAGCTTGAAGAGATCAACAATAAAGAGGTAGCCACCAAAAAGCTTGCAAGGGAAGAGAGAGAGAAACGTGAAGCTTTGAGAAGAGAAGCTAAGTATTTAAAAGAAAGTGCTGAAAGAGAGGGCATTTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAGGATGCCAAAGAGAAGGGAAAGCATGAAAAAGCTCTTCAAGGACCTCTGCAGCAATACCAATATTTTCAGTGGGAAGATATCGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAATTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGTGCAAAATCCATCACCCCCATCTACTATTACTCCTCGGTGCGTGTCCGGATAAGAATTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACCACAGAGGCAATACACCTACAATCCCATGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCTTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCCATAATCCACCGTGACCTTAAACCAGCAAACATCTTACTTGACCAAAACCTGGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTTAATTCAGACCCTTTAATGTCTACTGCGTTCATGAATAGTGGACCAGTTGGGACTCTCTGCTACATAGATCCCGAGTATCAACGAACTGGGTTACTCTCGCCTAAGTCTGATGTATATGCCTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCACTTTAATTAATGTTCTGGATATAGAGGCTGGGGATTGGCCCGTCGAAGAGACGTATGAATTGGCAAGATTAGGACTTCGCTGCACCGAGATGCAACGTAAAGATAGGCCTGACTTAAAGGATCAGGTGCTTCCCTTGTTGCTGACACTGAAAGAAGTCGCTGATGAGGCTCGCAATTTGGCCTCCAAAGTTCCACCTGCAATTCCTAATCATTTCATCTGTCCAATTCTTCAGGATGTGATGAATGACCCTTGTGTGGCGGCGGATGGATACACATACGATCGTCAGGCAATAGAGAAGTGGATTCAGGAGAACGATAATTCACCCATAACGATGTTGCCGTTGCCGCATAAGAATTTAATACCAAATTACAATCTACTCTCTGCAATTCGCTGCCGTCGTCCTCAGCAGTCGCCTCCCTCGCCACTACTGATCACCGCCGCCGTCAAAAATCGGTTGAGGGGAGGATAA 2622 42.91 MVIYRSSAALQFRECSFEAQRTWASLEGNSACEGSFDAKSCIIMEGMEDESNRNLMLLPSPSLVVAVAISGKKNSKYIIRWSLDKFLPEGVTDFKLLHVIPRISSVPTPMGNSIPISQVRDDVAAAYRKEIGWQTSEKLLPYKKMFSERKVHLDIATLEADDVANTIMEEVTKCSINKLVIGVSSQGLFSRKLNGLSSRISALAPKYCTVYAISKGKLASIRPPNIVQSMLFQKEKDDASEASSANSYSSHTSGSLTDSSSSLVTSYSHFPSPSSSLPLQRFQALSTINQSLLTTKPSLIKVNHSRCQSVDIENQVDGVHSSSYASDCAQTLSQTSSCKSLPADYQSWVTDEASSTGAFNDYPSCESQADVSFALEKLRIELRHARGMYAIAQRETIDASRKLNHLSKQRTEEARKLEEINNKEVATKKLAREEREKREALRREAKYLKESAEREGIYRKEAETKALQDAKEKGKHEKALQGPLQQYQYFQWEDIVSATSSFSEDLKIGMGAHGTVYKCNLHHTTVAVKVLHSRDDHKKMQFLQELEILCKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYHRGNTPTIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFMNSGPVGTLCYIDPEYQRTGLLSPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCTLINVLDIEAGDWPVEETYELARLGLRCTEMQRKDRPDLKDQVLPLLLTLKEVADEARNLASKVPPAIPNHFICPILQDVMNDPCVAADGYTYDRQAIEKWIQENDNSPITMLPLPHKNLIPNYNLLSAIRCRRPQQSPPSPLLITAAVKNRLRGG 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4744444 4757772 + CcPI632755_01g004830.1 Cco01g0483 169345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0483 873 SUPERFAMILY Protein kinase-like (PK-like) 482 762 IPR011009 -
Cco01g0483 873 Pfam Protein tyrosine and serine/threonine kinase 507 758 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g0483 873 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 65 200 - -
Cco01g0483 873 SMART Ubox_2 788 850 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco01g0483 873 Gene3D Phosphorylase Kinase; domain 1 471 574 - -
Cco01g0483 873 Gene3D Transferase(Phosphotransferase) domain 1 575 780 - -
Cco01g0483 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g0483 873 ProSitePatterns Protein kinases ATP-binding region signature. 508 529 IPR017441 GO:0005524(InterPro)
Cco01g0483 873 Coils Coil 403 451 - -
Cco01g0483 873 Pfam U-box domain 785 848 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco01g0483 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 855 IPR013083 -
Cco01g0483 873 PANTHER OS02G0152300 PROTEIN 65 847 IPR051348 -
Cco01g0483 873 Coils Coil 375 395 - -
Cco01g0483 873 SMART serkin_6 502 764 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0483 873 Gene3D HUPs 54 213 IPR014729 -
Cco01g0483 873 CDD RING-Ubox_WDSUB1-like 786 840 - -
Cco01g0483 873 SUPERFAMILY RING/U-box 779 848 - -
Cco01g0483 873 CDD STK_N 64 216 - -
Cco01g0483 873 ProSiteProfiles U-box domain profile. 784 857 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco01g0483 873 ProSiteProfiles Protein kinase domain profile. 502 764 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0483 Cco-Chr1:4744444 Cco11g0188 Cco-Chr11:1845996 8.10E-127 dispersed
Cco01g0483 Cco-Chr1:4744444 Cco05g0994 Cco-Chr5:8762956 3.00E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86499 PF07714 PK_Tyr_Ser-Thr 5.30E-40 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0483 - - - 0.0