Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0483 | ATGGTGATTTATCGTTCCTCTGCTGCACTACAGTTTAGAGAGTGTTCTTTTGAGGCACAGCGAACTTGGGCATCTCTAGAGGGAAATTCTGCCTGTGAAGGGAGCTTTGATGCTAAGAGTTGCATAATTATGGAGGGGATGGAAGATGAATCCAATAGAAATCTTATGTTGCTGCCTTCCCCTTCTCTAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGATAAGTTTCTACCTGAGGGCGTCACTGATTTCAAGTTGCTACACGTCATCCCAAGGATTAGTAGCGTTCCAACGCCAATGGGAAACTCAATTCCAATTTCACAAGTTCGTGATGATGTCGCTGCGGCTTACAGGAAAGAAATCGGGTGGCAGACAAGTGAAAAACTTCTTCCATATAAGAAGATGTTTTCTGAGAGAAAGGTTCATCTTGATATTGCAACTCTTGAAGCAGATGATGTGGCAAATACAATAATGGAAGAGGTTACAAAATGTTCAATCAACAAGCTTGTTATAGGAGTTTCTTCACAGGGATTATTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAAATATTGTACAGTCTATGCTATTTCAAAAGGAAAACTAGCCTCAATACGGCCGCCTAATATTGTACAGTCTATGCTTTTTCAAAAGGAAAAAGATGATGCGAGTGAAGCAAGTTCTGCGAATAGCTACTCAAGCCATACATCTGGCTCCCTTACAGATAGCAGTTCAAGCTTAGTTACCTCCTACTCTCATTTCCCTTCTCCTTCCTCTTCCTTACCATTACAACGATTTCAAGCTCTTTCAACCATTAATCAATCTCTTCTTACGACAAAACCGAGCCTCATTAAAGTCAACCATTCTAGATGTCAATCCGTTGATATTGAGAATCAGGTGGATGGAGTTCATTCTTCTTCCTATGCTTCCGATTGTGCACAAACATTGAGTCAAACCTCTAGTTGTAAAAGCTTGCCAGCAGATTACCAGTCCTGGGTTACTGATGAAGCTTCATCCACAGGCGCGTTCAATGATTATCCTTCATGTGAAAGTCAGGCGGATGTGAGCTTTGCGCTTGAAAAGTTGAGAATCGAACTAAGACATGCGAGAGGAATGTATGCAATTGCTCAACGTGAGACAATTGATGCCTCTCGAAAGCTGAACCATCTAAGTAAGCAACGAACAGAGGAAGCTAGGAAGCTTGAAGAGATCAACAATAAAGAGGTAGCCACCAAAAAGCTTGCAAGGGAAGAGAGAGAGAAACGTGAAGCTTTGAGAAGAGAAGCTAAGTATTTAAAAGAAAGTGCTGAAAGAGAGGGCATTTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAGGATGCCAAAGAGAAGGGAAAGCATGAAAAAGCTCTTCAAGGACCTCTGCAGCAATACCAATATTTTCAGTGGGAAGATATCGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAATTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGTGCAAAATCCATCACCCCCATCTACTATTACTCCTCGGTGCGTGTCCGGATAAGAATTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACCACAGAGGCAATACACCTACAATCCCATGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCTTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCCATAATCCACCGTGACCTTAAACCAGCAAACATCTTACTTGACCAAAACCTGGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTTAATTCAGACCCTTTAATGTCTACTGCGTTCATGAATAGTGGACCAGTTGGGACTCTCTGCTACATAGATCCCGAGTATCAACGAACTGGGTTACTCTCGCCTAAGTCTGATGTATATGCCTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCACTTTAATTAATGTTCTGGATATAGAGGCTGGGGATTGGCCCGTCGAAGAGACGTATGAATTGGCAAGATTAGGACTTCGCTGCACCGAGATGCAACGTAAAGATAGGCCTGACTTAAAGGATCAGGTGCTTCCCTTGTTGCTGACACTGAAAGAAGTCGCTGATGAGGCTCGCAATTTGGCCTCCAAAGTTCCACCTGCAATTCCTAATCATTTCATCTGTCCAATTCTTCAGGATGTGATGAATGACCCTTGTGTGGCGGCGGATGGATACACATACGATCGTCAGGCAATAGAGAAGTGGATTCAGGAGAACGATAATTCACCCATAACGATGTTGCCGTTGCCGCATAAGAATTTAATACCAAATTACAATCTACTCTCTGCAATTCGCTGCCGTCGTCCTCAGCAGTCGCCTCCCTCGCCACTACTGATCACCGCCGCCGTCAAAAATCGGTTGAGGGGAGGATAA | 2622 | 42.91 | MVIYRSSAALQFRECSFEAQRTWASLEGNSACEGSFDAKSCIIMEGMEDESNRNLMLLPSPSLVVAVAISGKKNSKYIIRWSLDKFLPEGVTDFKLLHVIPRISSVPTPMGNSIPISQVRDDVAAAYRKEIGWQTSEKLLPYKKMFSERKVHLDIATLEADDVANTIMEEVTKCSINKLVIGVSSQGLFSRKLNGLSSRISALAPKYCTVYAISKGKLASIRPPNIVQSMLFQKEKDDASEASSANSYSSHTSGSLTDSSSSLVTSYSHFPSPSSSLPLQRFQALSTINQSLLTTKPSLIKVNHSRCQSVDIENQVDGVHSSSYASDCAQTLSQTSSCKSLPADYQSWVTDEASSTGAFNDYPSCESQADVSFALEKLRIELRHARGMYAIAQRETIDASRKLNHLSKQRTEEARKLEEINNKEVATKKLAREEREKREALRREAKYLKESAEREGIYRKEAETKALQDAKEKGKHEKALQGPLQQYQYFQWEDIVSATSSFSEDLKIGMGAHGTVYKCNLHHTTVAVKVLHSRDDHKKMQFLQELEILCKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYHRGNTPTIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFMNSGPVGTLCYIDPEYQRTGLLSPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCTLINVLDIEAGDWPVEETYELARLGLRCTEMQRKDRPDLKDQVLPLLLTLKEVADEARNLASKVPPAIPNHFICPILQDVMNDPCVAADGYTYDRQAIEKWIQENDNSPITMLPLPHKNLIPNYNLLSAIRCRRPQQSPPSPLLITAAVKNRLRGG | 873 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4744444 | 4757772 | + | CcPI632755_01g004830.1 | Cco01g0483 | 169345 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0483 | 873 | SUPERFAMILY | Protein kinase-like (PK-like) | 482 | 762 | IPR011009 | - | |
Cco01g0483 | 873 | Pfam | Protein tyrosine and serine/threonine kinase | 507 | 758 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco01g0483 | 873 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 65 | 200 | - | - | |
Cco01g0483 | 873 | SMART | Ubox_2 | 788 | 850 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco01g0483 | 873 | Gene3D | Phosphorylase Kinase; domain 1 | 471 | 574 | - | - | |
Cco01g0483 | 873 | Gene3D | Transferase(Phosphotransferase) domain 1 | 575 | 780 | - | - | |
Cco01g0483 | 873 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 620 | 632 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco01g0483 | 873 | ProSitePatterns | Protein kinases ATP-binding region signature. | 508 | 529 | IPR017441 | GO:0005524(InterPro) | |
Cco01g0483 | 873 | Coils | Coil | 403 | 451 | - | - | |
Cco01g0483 | 873 | Pfam | U-box domain | 785 | 848 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco01g0483 | 873 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 784 | 855 | IPR013083 | - | |
Cco01g0483 | 873 | PANTHER | OS02G0152300 PROTEIN | 65 | 847 | IPR051348 | - | |
Cco01g0483 | 873 | Coils | Coil | 375 | 395 | - | - | |
Cco01g0483 | 873 | SMART | serkin_6 | 502 | 764 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0483 | 873 | Gene3D | HUPs | 54 | 213 | IPR014729 | - | |
Cco01g0483 | 873 | CDD | RING-Ubox_WDSUB1-like | 786 | 840 | - | - | |
Cco01g0483 | 873 | SUPERFAMILY | RING/U-box | 779 | 848 | - | - | |
Cco01g0483 | 873 | CDD | STK_N | 64 | 216 | - | - | |
Cco01g0483 | 873 | ProSiteProfiles | U-box domain profile. | 784 | 857 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco01g0483 | 873 | ProSiteProfiles | Protein kinase domain profile. | 502 | 764 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0483 | Cco-Chr1:4744444 | Cco11g0188 | Cco-Chr11:1845996 | 8.10E-127 | dispersed | |
Cco01g0483 | Cco-Chr1:4744444 | Cco05g0994 | Cco-Chr5:8762956 | 3.00E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86499 | PF07714 | PK_Tyr_Ser-Thr | 5.30E-40 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0483 | - | - | - | 0.0 |