Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0486 | ATGCTCAAACTAATTCTTCTCGTTGCTTCGGCCACCATTTTCCTCCTTCTCCTGATTTCCATCTTCATTTTTCGCCTTAAGCTCTCTAAAAGTCACCACATCCACAACCCTTCCCCCAATAAGAACAAGAAAACAGAGCACACGCCGCCGGAGCTCACGACTTTTGAGGGCGGCGAAGATTTGACGATCGACGAAATTCTAGAAGCTCCTGGGGAAGTGATCGGAAAATCCCATTATGGAACTCTGTATAAGGCTACGTTACAGAGCACCCAAACCACCCGGCTACTCAGATTCCTCCGCCCGGCCGCTGGAGGAGGAGACCATAATGACGACGTCGTTCGGTTTCTGGGTTCGATTCGGCACCGGAATTTGGTCCCGTTGCTGGGATTCTACGCCGGCGGGAGGGGCGAGAAGCTTCTGATTCATCCGTTCTACGAGCAGGGGAATTTGGCGGAGTTCATTAGAGGTGAAACAGAATCAAAAAATTGGGAGGTCATTTACAAAATCTCCATCGGAATCGCAAAAGCCCTGCATCATCTTCACAACGGATTACAAAAACCAATCCCTCATGGAAATCTCAACTCCAACAACATTCTTCTCGATCAAAATCTCCATCCGCACGTCTCCGATTTCGGCCTCCATCTCCTCCTCAACGCCGCCGCAACTCGAGAAATGCTCCACGTTTCCGCCGCCGCTGGCTACAAAGCGCCGGAACTTATCAAAATGACCGACGCTGATGAACGCACCGACGTCTACAGCTACGGCAAGATCTTACTCGAGTTGCTCTCTGCCAAAGAGCCCACGATTCGAAATCCGGTTGCTACCGGCGATTCCGGTGTTTCTGAAAATCGGATTCTCCGATGCATTCTTCAGATCGGCGAGGTTTGTTGTCGTTCTTCGCCGAATCTTCGGCCGGATTTCAAAGAAGTGATTGCTAAGATCGAAGAAATCGGAAGGATTGAGATGGATTAA | 972 | 50.0 | MLKLILLVASATIFLLLLISIFIFRLKLSKSHHIHNPSPNKNKKTEHTPPELTTFEGGEDLTIDEILEAPGEVIGKSHYGTLYKATLQSTQTTRLLRFLRPAAGGGDHNDDVVRFLGSIRHRNLVPLLGFYAGGRGEKLLIHPFYEQGNLAEFIRGETESKNWEVIYKISIGIAKALHHLHNGLQKPIPHGNLNSNNILLDQNLHPHVSDFGLHLLLNAAATREMLHVSAAAGYKAPELIKMTDADERTDVYSYGKILLELLSAKEPTIRNPVATGDSGVSENRILRCILQIGEVCCRSSPNLRPDFKEVIAKIEEIGRIEMD | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4772241 | 4776414 | - | CcPI632755_01g004860.1 | Cco01g0486 | 169348 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0486 | 323 | Gene3D | Transferase(Phosphotransferase) domain 1 | 62 | 323 | - | - | |
Cco01g0486 | 323 | Pfam | Protein tyrosine and serine/threonine kinase | 72 | 313 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco01g0486 | 323 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED | 4 | 268 | IPR052451 | - | |
Cco01g0486 | 323 | ProSiteProfiles | Protein kinase domain profile. | 68 | 317 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0486 | 323 | SUPERFAMILY | Protein kinase-like (PK-like) | 71 | 315 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0486 | Cco-Chr1:4772241 | Cco09g0907 | Cco-Chr9:8522635 | 2.90E-45 | dispersed | |
Cco01g0486 | Cco-Chr1:4772241 | Cco05g1020 | Cco-Chr5:8967913 | 5.80E-22 | wgd | |
Cco01g0486 | Cco-Chr1:4772241 | Cco07g1769 | Cco-Chr7:31810622 | 4.50E-83 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86500 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-26 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0486 | - | - | - | 0.0 |