Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0486 ATGCTCAAACTAATTCTTCTCGTTGCTTCGGCCACCATTTTCCTCCTTCTCCTGATTTCCATCTTCATTTTTCGCCTTAAGCTCTCTAAAAGTCACCACATCCACAACCCTTCCCCCAATAAGAACAAGAAAACAGAGCACACGCCGCCGGAGCTCACGACTTTTGAGGGCGGCGAAGATTTGACGATCGACGAAATTCTAGAAGCTCCTGGGGAAGTGATCGGAAAATCCCATTATGGAACTCTGTATAAGGCTACGTTACAGAGCACCCAAACCACCCGGCTACTCAGATTCCTCCGCCCGGCCGCTGGAGGAGGAGACCATAATGACGACGTCGTTCGGTTTCTGGGTTCGATTCGGCACCGGAATTTGGTCCCGTTGCTGGGATTCTACGCCGGCGGGAGGGGCGAGAAGCTTCTGATTCATCCGTTCTACGAGCAGGGGAATTTGGCGGAGTTCATTAGAGGTGAAACAGAATCAAAAAATTGGGAGGTCATTTACAAAATCTCCATCGGAATCGCAAAAGCCCTGCATCATCTTCACAACGGATTACAAAAACCAATCCCTCATGGAAATCTCAACTCCAACAACATTCTTCTCGATCAAAATCTCCATCCGCACGTCTCCGATTTCGGCCTCCATCTCCTCCTCAACGCCGCCGCAACTCGAGAAATGCTCCACGTTTCCGCCGCCGCTGGCTACAAAGCGCCGGAACTTATCAAAATGACCGACGCTGATGAACGCACCGACGTCTACAGCTACGGCAAGATCTTACTCGAGTTGCTCTCTGCCAAAGAGCCCACGATTCGAAATCCGGTTGCTACCGGCGATTCCGGTGTTTCTGAAAATCGGATTCTCCGATGCATTCTTCAGATCGGCGAGGTTTGTTGTCGTTCTTCGCCGAATCTTCGGCCGGATTTCAAAGAAGTGATTGCTAAGATCGAAGAAATCGGAAGGATTGAGATGGATTAA 972 50.0 MLKLILLVASATIFLLLLISIFIFRLKLSKSHHIHNPSPNKNKKTEHTPPELTTFEGGEDLTIDEILEAPGEVIGKSHYGTLYKATLQSTQTTRLLRFLRPAAGGGDHNDDVVRFLGSIRHRNLVPLLGFYAGGRGEKLLIHPFYEQGNLAEFIRGETESKNWEVIYKISIGIAKALHHLHNGLQKPIPHGNLNSNNILLDQNLHPHVSDFGLHLLLNAAATREMLHVSAAAGYKAPELIKMTDADERTDVYSYGKILLELLSAKEPTIRNPVATGDSGVSENRILRCILQIGEVCCRSSPNLRPDFKEVIAKIEEIGRIEMD 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4772241 4776414 - CcPI632755_01g004860.1 Cco01g0486 169348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0486 323 Gene3D Transferase(Phosphotransferase) domain 1 62 323 - -
Cco01g0486 323 Pfam Protein tyrosine and serine/threonine kinase 72 313 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g0486 323 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 4 268 IPR052451 -
Cco01g0486 323 ProSiteProfiles Protein kinase domain profile. 68 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g0486 323 SUPERFAMILY Protein kinase-like (PK-like) 71 315 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0486 Cco-Chr1:4772241 Cco09g0907 Cco-Chr9:8522635 2.90E-45 dispersed
Cco01g0486 Cco-Chr1:4772241 Cco05g1020 Cco-Chr5:8967913 5.80E-22 wgd
Cco01g0486 Cco-Chr1:4772241 Cco07g1769 Cco-Chr7:31810622 4.50E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86500 PF07714 PK_Tyr_Ser-Thr 1.10E-26 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0486 - - - 0.0