Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0498 ATGGCTCAAAAGCTTCATTTTTCCATCATTCTAATTTCTTTGTTCATCCTCTCGTCAATTTCCCAATCTTTCTCAACCAAACCCAATAACAATGCCATAGATTTATGGTGCAGCCGAACGCCATATCCCGATGTTTGCAAACACTTCTTCAATGGCCAATTCGACCTAAAAAAGCTTTCAGAATTCAAAAAAACAGCCCTCAAAATTGCGATGGAGAGAGCTATAATAGCCGAAACACTCACAAAAGAGTTAGGCCAGAAATGCCGTAACCAAAAAGAGAGAGCCGCATGGGCTGACTGTTTGGAGCTTTACCAAACCACAATCCTCCACCTCAACAAAACCTTCTCCGAACAAAATTGCTCCGACTTCGACATCCAAACATGGCTCAGCTCCGCCTTGACCAACCTCGACACATGTCGTGCCGGGTTCGTCGACCTCGGCATCAAGGACTACGGCGTCGTTTTCCCTTTTTTGGCAAATAACAACGTCACGAAGCTTATAAGTAATAGTTTGGCGATGAATAACTGCTCCGAGAGTGATGTGGGGTATAAGAATAATGAAGGGTTTCCGAAGTGGCTTCGGGTTGGAGACCGGCGGTTGTTGCAGGCGGCAGAGCCTAAGGCAGATTTGGTGGTGGCGCAAGACGGGTCGGGGAATTATAAGACGGTGCAAGCGGCGGTGGACGCGGCGGCGAAGAGGAAAGGGAGTGGGAGATTTGTGATACATATAAAGAGAGGAGTTTATAAGGAGAATGTAGTGATAAAGGTGAAGAATTTGATGCTTGTTGGAGATGGATTGAGGTATACAATTATTAGTGGGAGTAGAAGTGTTGGTGGTGGTTCTACTACTTTCAACTCTGCTACTGTTGCTGTGACTGGTGAACGTTTCATTGCCCGTGGCATCACATTCCGGAACACTGCGGGACCCGAAAACCATCAAGCAGTAGCCCTTCGGTCAGGCTCCGATCTCTCGGTGTTCTTTCGGTGCGGTTTCGAGGGATACCAAGATACTCTCTACGTGCATTCACAAAGACAATTCTACAGAGAATGCTACATTTATGGTACGGTCGATTTCATCTTCGGTAATGCCGCTGTAGTTCTCCAGAACTGCATGATCTACGCAAGAAAACCTATCCCAGGGCAACAATGCGTGGTCACGGCTCAAGGCCGAACCGACCCAAACCAAAACACGGGAATCTCAATCCACAACTCGAGAGTGATGGCAGCAGATGATCTCAAACCGGTTCTTAGCTCAGTGAGAACCTACTTGGGGAGGCCATGGAAGGAATACTCTCGCACAGTTTACTTGCAAAACTTCATGGATAGCTTGGTGAATCCAGCAGGATGGTTGGAATGGAGTGGTAATTTTGCATTGAATACATTGTATTATGGAGAGTTTAAGAATTTTGGGCCTGGTTCTTCAACTGCTAGGAGAGTGAAATGGAAGGGTTATAGAGTGATAACAAGTGCCACTGAAGCATCAAAGTTTACTGTTGGGAATTTTATTGCTGGGACTTCATGGCTGCCTGGAACTGGAGTACCATTCACTGCTGGACTTTGA 1560 46.41 MAQKLHFSIILISLFILSSISQSFSTKPNNNAIDLWCSRTPYPDVCKHFFNGQFDLKKLSEFKKTALKIAMERAIIAETLTKELGQKCRNQKERAAWADCLELYQTTILHLNKTFSEQNCSDFDIQTWLSSALTNLDTCRAGFVDLGIKDYGVVFPFLANNNVTKLISNSLAMNNCSESDVGYKNNEGFPKWLRVGDRRLLQAAEPKADLVVAQDGSGNYKTVQAAVDAAAKRKGSGRFVIHIKRGVYKENVVIKVKNLMLVGDGLRYTIISGSRSVGGGSTTFNSATVAVTGERFIARGITFRNTAGPENHQAVALRSGSDLSVFFRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMAADDLKPVLSSVRTYLGRPWKEYSRTVYLQNFMDSLVNPAGWLEWSGNFALNTLYYGEFKNFGPGSSTARRVKWKGYRVITSATEASKFTVGNFIAGTSWLPGTGVPFTAGL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4847802 4850354 - CcPI632755_01g004980.1 Cco01g0498 169360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0498 519 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Cco01g0498 519 Gene3D - 203 519 IPR012334 -
Cco01g0498 519 Pfam Pectinesterase 209 504 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco01g0498 519 SUPERFAMILY Pectin lyase-like 206 518 IPR011050 -
Cco01g0498 519 Pfam Plant invertase/pectin methylesterase inhibitor 32 173 IPR006501 GO:0004857(InterPro)
Cco01g0498 519 CDD PMEI-like_3 35 175 - -
Cco01g0498 519 PANTHER PECTINESTERASE 9 509 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco01g0498 519 SMART PMEI_2 28 173 IPR006501 GO:0004857(InterPro)
Cco01g0498 519 FunFam Pectinesterase 203 519 - -
Cco01g0498 519 NCBIfam pectinesterase inhibitor domain 6 175 IPR006501 GO:0004857(InterPro)
Cco01g0498 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 176 IPR035513 -
Cco01g0498 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Cco01g0498 519 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0498 Cco-Chr1:4847802 Cco05g0884 Cco-Chr5:7629229 7.30E-200 dispersed
Cco01g0498 Cco-Chr1:4847802 Cco01g0669 Cco-Chr1:6941135 3.60E-138 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0498 K01051 - csv:101216005 924.465