Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0519 ATGGTCTTCTGCAAAATGGCCCCTACTTCCCTCGCTTCCCGCTTCCGACAATCCGTCACCTCGACGGCACTCCGATCGTACGTCGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCTGTCGTCGGAGCATCCATGTCCTCTCGGAAGTTTTTGCCGGGTGTTGTTGCTACGACAGACCCGTCGAGTCTTCTGATGGCCGCCATCGCCAATGCCTTCGCTTTGGCCTCGGCTGTTTACATTGCCGCCAACATCTCCGGCGGACATGTCAACCCGGCTGTGACGTTCGGAATGGCCGTCGCCGGCCATGTTAGTGTTCCCACTGCTCTCTTTTACTGGTTTGCTCAAATGCTTGCCTCTGTCATGGCCTGCATTGTTCTTAGAGCCACCCTTGTTGGACAGCGCGTTACAAGCTATGCCATCACTGAAGAGATGACGGGCTTCGGAGCGTCGGTGGTGGAAGGTGTATTGACATTTGCCCTAGTATACACCGTTTTCGCTGCCAGCGACTCAAGAAGAGGTCCGTGCAATGCGATCGGCGCTGTGATGATTGGGCTGATGGCTGGAGCCAATGTGCTGGCTGCCGGGCCATTTTCCGGTGGATCGGTGAACCCGGCATGCGCGTTTGGGTCAGCAATTGTGGCTGGGAGTTTCAAGAACCAGGCAGTGTACTGGGTTGGGCCATTGATTGGGGCGGCTTTGGCTGGAATTGTTCATGATAATGTGGTTTTTCCGGCTGAAAATGTAGATTCATTCAGAGGGGTTCCTGAGGCTGTTGTGGTGTAA 786 54.83 MVFCKMAPTSLASRFRQSVTSTALRSYVAEFISTFFYVFSVVGASMSSRKFLPGVVATTDPSSLLMAAIANAFALASAVYIAANISGGHVNPAVTFGMAVAGHVSVPTALFYWFAQMLASVMACIVLRATLVGQRVTSYAITEEMTGFGASVVEGVLTFALVYTVFAASDSRRGPCNAIGAVMIGLMAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVVFPAENVDSFRGVPEAVVV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5041315 5042525 + CcPI632755_01g005190.1 Cco01g0519 169381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0519 261 Gene3D Glycerol uptake facilitator protein. 10 252 IPR023271 -
Cco01g0519 261 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0519 261 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0519 261 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0519 261 PRINTS Major intrinsic protein family signature 71 95 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0519 261 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0519 261 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0519 261 SUPERFAMILY Aquaporin-like 18 247 IPR023271 -
Cco01g0519 261 ProSitePatterns MIP family signature. 89 97 IPR022357 -
Cco01g0519 261 Pfam Major intrinsic protein 20 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g0519 261 FunFam Probable aquaporin TIP5-1 9 251 - -
Cco01g0519 261 PANTHER AQUAPORIN-8 16 245 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0519 Cco-Chr1:5041315 Cco09g0180 Cco-Chr9:1649469 1.30E-48 dispersed
Cco01g0519 Cco-Chr1:5041315 Cco04g1150 Cco-Chr4:26865090 2.60E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0519 K09873 - csv:101214078 444.891