Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0534 ATGGAGAATATGAGATGTTCAATATTTAGAGGTATTGCAAGTGATTTCCGAGGAAGAGCTTCTTGTTATAAACAAGATTGGATTGGTGGTCTCCGTTCAGGAATCGGGATTTTGGCGCCAACTACGTACATCTTTTTTGCTTCCGCGCTGCCCGTCATTGCTTTTGGCGAGCAATTGAGTAGGAACACAGATGGAAGCTTAAGCACAGTTGAAACTTTGGCTTCTACAGCCATTTGTGGGATTCTTCACTCCATTTTTGGTGGCCAACCTCTTCTTATTGTAGGAGTTGCTGAACCCACCATTGTTATGTACACTTATTTGTTCAACTTTGCAAAAGATAGGAAAGATTTGGGAAGAGAACTCTTCCTTGCTTGGGTTGGATGGGTTTCCGTGTGGACGGCTATGTTATTGATGCTTTTGGCAATATTCAATGCTTGTAGTCTAATCAACAGATTTACAAGAATTGCAGGAGAACTTTTTGCCATTTTGATTTCTACTTTGTTCATTCAAGAAGCTATCAAGGGAGTTGTAAGTGAGTTTAAAATTCCCAAAGCAGAGAATCCAAATATGGAGAGATATGAGTTTCATTGGCTTTACACAAATGGATTGCTTGGAATCATATTTACTTTTGGAGTTTCATATTCTTCTTTGAAGAGCAGAAAGGCAAGGTCATGGTTATATGCCACAGGGTGGTTGAGAAGCTTCATTGCAGACTATGGAGTTCCTCTCATGGTTGTAGTATGGACTGCATTATCATTCAGTGTCCCAACAAAAATTCCTTCTGGATTTCCTAGAAGACTTGTAAGCCCTTTGCCATGGGAATCTGCTTCTTTGTACCATTGGACTGTGATCAAGGATATGGGGAAAATCCCTCCCTCATACATATTTGCAGCTCTTCTCCCTGCTGTGATGATTGCAGGCCTTTACTTTTTTGATCATAGTGTTGCTTCTCAATTGGCACAACAAAAGGAGTTTAATCTTAAGAATCCTTCAGCATATCACTATGACATCTTCTTGCTTGGTTTTATGACTTTACTTTGTGGATTACTTGGGCTTCCTCCCTCAAATGGGGTTTTACCACAGTCTCCAATGCATACTAAAAGCCTTGCAGTTCTTAAGAGGCAGTTGATAAGAAAAAAGATGGTTGAAAGTGCTAAGGAAAGCATAAAAAAGAAAGCTACAAACTCAGAAATCTATGTCCAAATGCAAGATGTGTTCATAGAAATGGATGGTAGCCCAGCTGTTAGTCCACTGGAGATGGATGTAGTGGTGAAAGAATTGGAAGATTTGAAGGAAGCAGTTATGAAAGAAAACAACAACAAAGAAAATGAAAATGAAGAAGAGAAATTTGGTCATCTTGAGAAGCACATTGATTCATATCTTCCAGTTAGAGTAAATGAGCAAAGAGTGAGTAATCTGCTACAGTCAGTCCTAGTGGCTTCATTAATTTTTGCAATACCATTGGTCAAGAAGATCCCAACATCTGTGCTTTGGGGATATTTTGCTTATATGGCCATTGATAGTCTTCCTGGAAACCAATTTTGGGAAAGGATTTTGCTCCTCTTCGTCATGCCTAGTCGACGTTACAAGGTGCTAGAAAATGCTCATGCTTCCTTTGTGGAGTTGGTGCCATTCAAATACATAACCATATTCACTCTCTTTCAACTTGTGTATCTTCTTCTCTGCTATGGAGTGACTTGGATCCCTATAGCTGGAGTCTTGTTTCCCTTACCTTTCTTCTTCCTCATTACCATAAGACAACACATTCTTCCCAAAGTACTCCGATCTCGATATTTGCAAGAGCTCGATGCAGCGGAATATGAAGAAATAAAGGGATCTCCGAAGACCTCGCTTAGTTTTTCTTTCAAGGGAAAGGATTCTACTCATATAGTTGAAGGTGGAGATGAGGTTGAAATGTGTGATGCTGAAATTCTAGATGTGTTGACAACCAATAGAGGGGAGTTGAAGATTAGAACAAGAAGCTTTAATGAAGATGGACATGGTCAGGTTTATCCTGAAATAGTTGAAATAGAATGA 2037 39.52 MENMRCSIFRGIASDFRGRASCYKQDWIGGLRSGIGILAPTTYIFFASALPVIAFGEQLSRNTDGSLSTVETLASTAICGILHSIFGGQPLLIVGVAEPTIVMYTYLFNFAKDRKDLGRELFLAWVGWVSVWTAMLLMLLAIFNACSLINRFTRIAGELFAILISTLFIQEAIKGVVSEFKIPKAENPNMERYEFHWLYTNGLLGIIFTFGVSYSSLKSRKARSWLYATGWLRSFIADYGVPLMVVVWTALSFSVPTKIPSGFPRRLVSPLPWESASLYHWTVIKDMGKIPPSYIFAALLPAVMIAGLYFFDHSVASQLAQQKEFNLKNPSAYHYDIFLLGFMTLLCGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRKKMVESAKESIKKKATNSEIYVQMQDVFIEMDGSPAVSPLEMDVVVKELEDLKEAVMKENNNKENENEEEKFGHLEKHIDSYLPVRVNEQRVSNLLQSVLVASLIFAIPLVKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVMPSRRYKVLENAHASFVELVPFKYITIFTLFQLVYLLLCYGVTWIPIAGVLFPLPFFFLITIRQHILPKVLRSRYLQELDAAEYEEIKGSPKTSLSFSFKGKDSTHIVEGGDEVEMCDAEILDVLTTNRGELKIRTRSFNEDGHGQVYPEIVEIE 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5148919 5162396 - CcPI632755_01g005340.1 Cco01g0534 169396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0534 678 Pfam HCO3- transporter integral membrane domain 463 605 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco01g0534 678 Pfam HCO3- transporter integral membrane domain 203 375 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco01g0534 678 Pfam HCO3- transporter integral membrane domain 8 185 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco01g0534 678 Gene3D Helical hairpin bin 19 61 - -
Cco01g0534 678 PANTHER ANION EXCHANGE PROTEIN 8 651 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Cco01g0534 678 Coils Coil 420 447 - -
Cco01g0534 678 FunFam probable boron transporter 2 19 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0534 Cco-Chr1:5148919 Cco08g1470 Cco-Chr8:26547740 4.30E-253 dispersed
Cco01g0534 Cco-Chr1:5148919 Cco07g1363 Cco-Chr7:27693852 1.50E-282 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0534 K24194 - csv:101210964 1009.59