Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g0537 ATGACTAATGTTCGAAATGATCCAATTTTACAAATGGAAACAACATGTGGAACACTTCTACACGAACTTCAGATCATTTGGGATGAAGTAGGGGAATCTGAGGCCACAAGGGACAAAATGTTGCTTGAGGTTGAACAAGAGTGCTTAGAAGTTTACAGAAGAAAGGTAGATCAAGCAAACCGCTTTAGAGCTCAGCTAAGGCAGGCAATTGCCGATTCTGAAGCAGAATTGGCTGCCATCTGCTCTGCAATGGGAGAGAGACCAGTACATACGAGGCAGGCTGATCAAAAGACTGGAACCTTGAGAGAAGAGATGGCCCGTGTTCTTCCACAAGTGGATGAAATGCGGAAAAGAAAAGTAGACAGAAGAAATCAAATTTTAGAAGTCCTAGAACAAATACAGAAGATATCCTATGAGATTTATGGATCAAAATTTTCACATTCCAGTGTAGCTATCGATGAAAATGATATATCATTGAGGAAGCTAGAAGAATTGCAAGGACAGTTACATACGCTACAGAAGGAGAAGAGTGACCGGCAGATGGTTGTTCAGGAGCACCTTCAGACTCTAAACTTGCTTTGTTCAGTGCTTGGGATGGATTTCAAGCAAACAGTGAATGGATTTCATCCTAATTTGGGTGACCCAGATGGAACTTTTAACATAACTAGTGAATCAATTGAAACCCTGGCTGCTGCAATAACTAATTTGCGCGAGGTCAAATTACGAAGAATGCAGCGGCTCCAAGATCTTGCTACAACTTTGTTGGAGCTTTGGAATCTAATGGATACACCAATGGAAGAACAACAGTTGTTCCAAAACGTGACATGTAATATAGCTGCTTCAGAAGATGAAGTAAACGAACCCAATAGTCTCTCTGTGGACTCAATTAATTCTGTTGAAGCAGAAGTGTCTCGGTTAGAAGAGTTAAAATCAAGCAAGATGAAAGAACTTGTTTTGAAGAAGAGGTCAGAGCTGGATGAGATTTGTAGAAAAACACATTTAGTCCTGGAAGAAGATACAATAGTGGAATATGCAATTGAAACTATCGACTCTGGAGATGTTGACCCTGCCATTATTCTTGAGCAAATTGAGCTTCAGATTGCCAGGATTAAAGAGGAAGCATTTGTCAGGAAAGAAATTCTTGAAAAAGTTGAGAAATGGTTGACTGCCTGTGATGAGGAGTGTTGGCTGGAGGAGTATAATAGGGATGAAAATAGATATAATGCTGGTAGAGGGGCACATCTCATTCTCAAACGCGCAGAGAAGGCCCGAGCTTTGGTTAATAAGCTTCCAGGAATGGTGGATGCATTAACTTCAAAAACAATGGCATGGGAGAAGGAAAGAGGGATTGAGTTTACATACGATGGAGTCAGTCTGCTCAGTATGCTTGAAGAGTATTCTGTATTAAGGCAAGAGAAAGAGCAGGAGCGTCGCAGGCTGCGGGACCAGAAGAAACTCCAGGGACAGTTAATAGCAGAACAGGAGGCTCTTTATGGATCGAAGCCAAGCCCCTCAAAACCCCAGAGTGTTAAAAAAGCTTCCAGAGCTTCAGCTGCAGGTGCAAATAGTAAAAGGCTTTCTCTTGGAGGGACGTTGCACCAAACGCCCAAGCCTGATCCAATTCACAAGGCAACACCTCAGTCACGTCCGTCTAGGAAAGGTGACCAGCTGAATGATCAAAACTATGATGAAGGATTTGGAGCTCTTCCAATTGCTGGCCGAAGAGAACTTGATTTTTCTGGTCAACCTGCGAGCCACAATAACTCGCTTTCCAATGCTCGTGAACCTGAGTTGGTGATTCGGAAGCCTTTTGCACCAATTGCTACCACAGTCCAACCAAAGACGAACACAACGAACTCAATCAATGATGCAAACACAGCATCTAGTGAACCGTTGCAAAAAACGAGCCCAACTAGCAATGTGCCATTTACACCTTTGAAGAAGATCTCAGTTGCTGCTGATGAAGACCAAAACATGACTCCAAAGGCAATGTCAATTCCAGTACCATCTACCCCTTCAACTCTATCAGTTGCAATGCATACCACTACAACTCCGGCAGTTGCCCTGCCTCCTCCCGCTTTCAAAGCTGAGGAAATTCCTGAAGACAACGTTGAATATTCGTTCGAGGAAAGAAGAGCCGGGTGCTGGATTTCGTCTCATTTTAATTGGCTCTGTTTTTGTGTTCTTGTTTCATTGTCTTCTTCATTGAGAGCTTCTTCTTGTTGTTGTGGTTTGTTAAATATCGTCTGTAGTGTGAATAATGGAGGTTTAGGGTTTAAGGTGTCGGTTTACCGTTTATGTACTTTTGCTTTAGAACACATCTTTTTCTTTTCTCTCACTGTAAAAATGGAAGAGAAAGAGGGTGGAGTGGATTTCGGGTTTGCAGTAAAAGTGAGCCAAGCTCCAGAGAGCTTCGGGATGATGGATTCGAGACCTGAAAATTCAAGCACAGATGGGGACACGCCGCCGCCGCAGCCGCCGGCGAGTGTTCCGACGGCGGGGGCTACAGATGGGAAGAAGAAAAGAGGGAGACCGAGAAAGTACGGTCCCGATGGGACTGTAGCTCCAACATTGTCACCAATGCCGATTTCGTCATCGATTCCACTGACCGGAGAATTTCCGGGTTGGAAACGGGGAAGAGGGCGGTCAGTAGAGTCGATTAAGAAGTCGCGGAAGTTCGAGTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCGGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTTATGTCATTTTCTCAACAAGGATCTCGGGCGATTTGTATACTCTCTGCTAATGGTATGGTTTCAAATGTTACACTTCGGCAGTCAACATCTTCTGGGGGTACTTTGACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCTTCTGAGATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTTTGGCTGGCCCAGATGGCCGGGTGATGGGTGGAGGACTTGCCGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGTAGTTTCCTGCCACCAGGTCACCAGCAGGAAAACAAACCAAAGAAGAATAGGATGGAGCCTACATCGAACACAATTTTGCCTCCCGCCAATGTTCTTTCTGGCGAAGGGACGAAGGAAGTATTTGGAGGAGTGAAGCCCGTAGTTGCGTTGACTCTAATTGGAGATAAAGCAGCTTCTTTAGACCAAACTTCAGCTTTTAAGACTTCACAAGTCAACGACAAATCACCTTTTCTACAAGAATCAAGAGATTTGCTGGTGCTTTGGCTTTTCCTCAACCTCGATCATCAGCAGTATGAGCTCATTGATTCTTTAAAGGGCTAA 3390 44.31 MTNVRNDPILQMETTCGTLLHELQIIWDEVGESEATRDKMLLEVEQECLEVYRRKVDQANRFRAQLRQAIADSEAELAAICSAMGERPVHTRQADQKTGTLREEMARVLPQVDEMRKRKVDRRNQILEVLEQIQKISYEIYGSKFSHSSVAIDENDISLRKLEELQGQLHTLQKEKSDRQMVVQEHLQTLNLLCSVLGMDFKQTVNGFHPNLGDPDGTFNITSESIETLAAAITNLREVKLRRMQRLQDLATTLLELWNLMDTPMEEQQLFQNVTCNIAASEDEVNEPNSLSVDSINSVEAEVSRLEELKSSKMKELVLKKRSELDEICRKTHLVLEEDTIVEYAIETIDSGDVDPAIILEQIELQIARIKEEAFVRKEILEKVEKWLTACDEECWLEEYNRDENRYNAGRGAHLILKRAEKARALVNKLPGMVDALTSKTMAWEKERGIEFTYDGVSLLSMLEEYSVLRQEKEQERRRLRDQKKLQGQLIAEQEALYGSKPSPSKPQSVKKASRASAAGANSKRLSLGGTLHQTPKPDPIHKATPQSRPSRKGDQLNDQNYDEGFGALPIAGRRELDFSGQPASHNNSLSNAREPELVIRKPFAPIATTVQPKTNTTNSINDANTASSEPLQKTSPTSNVPFTPLKKISVAADEDQNMTPKAMSIPVPSTPSTLSVAMHTTTTPAVALPPPAFKAEEIPEDNVEYSFEERRAGCWISSHFNWLCFCVLVSLSSSLRASSCCCGLLNIVCSVNNGGLGFKVSVYRLCTFALEHIFFFSLTVKMEEKEGGVDFGFAVKVSQAPESFGMMDSRPENSSTDGDTPPPQPPASVPTAGATDGKKKRGRPRKYGPDGTVAPTLSPMPISSSIPLTGEFPGWKRGRGRSVESIKKSRKFEYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGHQQENKPKKNRMEPTSNTILPPANVLSGEGTKEVFGGVKPVVALTLIGDKAASLDQTSAFKTSQVNDKSPFLQESRDLLVLWLFLNLDHQQYELIDSLKG 1129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5209517 5222485 + CcPI632755_01g005370.1 Cco01g0537 169399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g0537 1129 Coils Coil 459 486 - -
Cco01g0537 1129 Coils Coil 296 316 - -
Cco01g0537 1129 Coils Coil 49 76 - -
Cco01g0537 1129 Coils Coil 155 175 - -
Cco01g0537 1129 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 6 607 IPR007145 GO:0000226(PANTHER)|GO:0000226(InterPro)|GO:0005737(PANTHER)|GO:0005819(PANTHER)|GO:0008017(InterPro)|GO:0008017(PANTHER)
Cco01g0537 1129 FunFam AT-hook motif nuclear-localized protein 1-like 912 1043 - -
Cco01g0537 1129 CDD DUF296 911 1025 IPR005175 -
Cco01g0537 1129 ProSiteProfiles PPC domain profile profile. 907 1046 IPR005175 -
Cco01g0537 1129 MobiDBLite consensus disorder prediction 501 516 - -
Cco01g0537 1129 Gene3D - 366 500 - -
Cco01g0537 1129 FunFam 65-kDa microtubule-associated protein 6 367 500 - -
Cco01g0537 1129 MobiDBLite consensus disorder prediction 613 643 - -
Cco01g0537 1129 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 508 - -
Cco01g0537 1129 Pfam Plants and Prokaryotes Conserved (PCC) domain 912 1025 IPR005175 -
Cco01g0537 1129 MobiDBLite consensus disorder prediction 1027 1046 - -
Cco01g0537 1129 Gene3D - 912 1042 - -
Cco01g0537 1129 MobiDBLite consensus disorder prediction 493 566 - -
Cco01g0537 1129 MobiDBLite consensus disorder prediction 805 881 - -
Cco01g0537 1129 SUPERFAMILY AF0104/ALDC/Ptd012-like 909 1040 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0537 Cco-Chr1:5209517 Cco05g0900 Cco-Chr5:7782168 8.30E-241 dispersed
Cco01g0537 Cco-Chr1:5209517 Cco05g0898 Cco-Chr5:7771166 1.30E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g0537 K16732 - csv:101215212 1248.8