Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g0546 | ATGTCCGAATCATCTCCCTCCGATCATAATCCCTCTCCCTCTGCTGCCAAGCTCCGCAAGATCCCCCCCATCCCCATTCGGCGCGATTCCATACCCAATGCCGGAGACTCCGATTCCGATCATGAAAACGATCCTCCCGAGGTTCAACCTCTTCAACCTGACGATTCCTCCATCATTATGGCCTCCTCTCTTGGGTTGAATCACATTCGTACGCGTTCTGCTCCTTTGCCGTTACGAACCTCTGCTGTTGGCACGCCCTCCAATTTGGGAGATAACTCTAGAAATAATGTTGTCTCCAGTGAGACCGAGTCCGAGCCAAAAGTTTCCTCCATTGAACAAGGAAAAAAAGTTCTGTGGAGTCAATCGAAATCGTTCAGATATCCTACATCTCTGAATCATGATCTTGAGGGCAATCATGTAGCGTTTGGAAAGGAAATTCAGTCTCCACGGTTCCGTGCCATACTGCGTGTAACTAGTGGAAGAAGGAGGAGAACCCCGGATATCAAAAGCTTCTCTCACGAGCTCAATTCCAAGGGAGTTCGCCCTTTTCCACTTTGGAAACCTCGGGCATTTGGGCATTTGGAAGAGATCATGGTGGCTATCAGAGCAAAATTTGACAGATTGAAGGATGATGTTAATTACGAATTGGGGATTTTTGCTGGAGATCTCGTAGATATACTTGAAAAGACAGACCAGTCTCAGCCTGAACTAAAAGAGGGTTTGGAGGACTTATTGGTGGTTGCTCGGAAATGTGCGACAATGTCACCTACTGAATTCTGGACGAAAGGTGAAGGGATTGTCCAAAATCTAGACGATCGGCGGCAGGAGCTGTCGTTAGGGATTCTTAAGCAAACCCATACCCGCCTTCTCTTCATCTTGACACGATGTACTCGGCTTATTCAGTTCAGAAAGGAGAGTGGTTATGAAGATGAACACATTTTGGGTCTTCATCAACTTAGTGATCTAGGAATTTATCCAGAGAAACTTAGGCAGCTCGAACAACTTGACTTTAGTGATCCATTGACTGTGAAAGACGAAATTGAGCAGCAGCTAAAGTTGGTTGGTAAGGATCAAGCCAGTCGACTGGTGAAGCAAGATTTAGGCCAAAGTTTTAGTACTAGTGCTGGAAATGTCGAGCTGGACTCTTCCTTAAGTGTTGATTCATCTACAAGCATGTATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAGAACCGGAAAGACTCTGACTCCACTGGAACACCTTCCAAGGATAAACTTGAACTGTTGCATGTACATGAAGCTAAGACCGGGAGCAATAACCAATTAGATACCCCATCTAGTCATATTGCGCATTCAGAAGCACCTCCTAAAGAACAAAAAGTATCTTGGGGAATATGGGGTTTTCATCAAAATGCCACTTTTGAGAATTTGATGATTTGTCGGATTTGTGAGGTTGAAATTCCGACCATTCATGTTGAGGAGCATTCTCGAATATGTACAATTGCCGATAGGTGTGATTTGAAAGGTTTAACTGTGAATGAGCGCCTTGAACGGGTTGCTACAGCTCTTGAAAAGATACTAGAGTCTTGGACGCCTAAAAGTACACCAAGAAGTTGTGATACTTCATGTGGAAATTTTGATACCGTCAAGGTTTCTACATCAAGTATGCAAGAAGAGGTTTTTGAGCTGTCATCTAAAGGAATCAATTTGTCAAGTCGAAACTCTGAAGATCTGCTTGATTCCCTCCCTGTTACTGGCAACTCCTCCTTCATGGAAAGTCAGGATATTTTTCCTGATTCATCAGACAATCGACCATTTATTTTCACACCAGATCACAGTACAAAATCAACGTCAGCTGGAACTCTAACACCAAGATCACCTCTTTTAACACCCAGATCCAGCCAGATTGAATTGTTGTTGCATGGACGAAGAGCAATATCTGAACTTGAAAATTATCAGCAGATTTACAAATTATTGGATATTGTTCGTTCCATTGCAAATGTTAACAACTCTGGATACGGTGCATTGGAGTCCATGCTTGATCGACTAGAGGACCTTAAATATGCAATCCAGGACAGGAAGGTGGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTCTTGCAGGAAAAATATGTGCATCTCTGTGGGCAAATTGAAGATGATAAAGTAGACTCTTCACATGGCATGGTTGATGAAGAGAGTTCAGTGGAAGATGATACTGTTCGTAGTTTGCGTGCAAGTCCTGTTAATACATCAAAAGATCGAACATCTATTGAAGATTTTGAAATAATTAAACCAATTAGTAGAGGGGCATATGGCCGAGTTTTTCTTGCCAGAAAAAGAGCAACTGGAGACTTGTTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATACGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGTAATATCCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGAGGTGATATTTATTCCTTGCTGAGAAACCTAGGGTGCTTAGATGAAGATATGGCTCGTATTTATATCGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATTGGTCAAGACGGTCACATTAAGTTGACAGATTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATCAGTGGAACTTCTTCACTTGGAGACAATGGACCAACATCTCAATCTTTGTCAAAAAGAGAACACAGACAAAAGCATTCAGTGGTTGGTACTCCAGATTATTTGGCTCCTGAGATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGAATACCGCCGTTCAATGCAGAAAATCCACAGCAAATTTTTGATAATATCATTAACAGAGACATACCGTGGCCCAAGGTGCCTGACGAGATGAGTTATGAAGCCCATGATTTGATTGACAAATTGTTGACTGAAAATTCAGTTCAAAGACTGGGAGCTACTGGAGCCAGAGAGGTGAAGGAACATCCTTTCTTCAAAGATATTAACTGGGAAACACTTGCAAGGCAGAAGGCCATGTTTATACCATCAGCAGAGCCACAGGATACAAGTTATTTCATGAGCCGTTATATATGGAATCCAGAAGATGAGGATTTTAATGGTGGAAGTGACTTTGATGATCATGATTTGACTGATACTTGCAGCAGTAGTTCATTTAGTAACCTACAAGATGAAGACGGAGACGAATGTGGTAGTTTGGCTGACTTCTGTACATCAGCCCTTTCTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAACTGGCTTCCATCAATTATGATTTGGTTGTGAAGAGCAGTCAAAACTCACCAGATGTATCAAAACCATCCATTCCTTGA | 3522 | 42.16 | MSESSPSDHNPSPSAAKLRKIPPIPIRRDSIPNAGDSDSDHENDPPEVQPLQPDDSSIIMASSLGLNHIRTRSAPLPLRTSAVGTPSNLGDNSRNNVVSSETESEPKVSSIEQGKKVLWSQSKSFRYPTSLNHDLEGNHVAFGKEIQSPRFRAILRVTSGRRRRTPDIKSFSHELNSKGVRPFPLWKPRAFGHLEEIMVAIRAKFDRLKDDVNYELGIFAGDLVDILEKTDQSQPELKEGLEDLLVVARKCATMSPTEFWTKGEGIVQNLDDRRQELSLGILKQTHTRLLFILTRCTRLIQFRKESGYEDEHILGLHQLSDLGIYPEKLRQLEQLDFSDPLTVKDEIEQQLKLVGKDQASRLVKQDLGQSFSTSAGNVELDSSLSVDSSTSMYRMASWKKLPSAAEKNRKDSDSTGTPSKDKLELLHVHEAKTGSNNQLDTPSSHIAHSEAPPKEQKVSWGIWGFHQNATFENLMICRICEVEIPTIHVEEHSRICTIADRCDLKGLTVNERLERVATALEKILESWTPKSTPRSCDTSCGNFDTVKVSTSSMQEEVFELSSKGINLSSRNSEDLLDSLPVTGNSSFMESQDIFPDSSDNRPFIFTPDHSTKSTSAGTLTPRSPLLTPRSSQIELLLHGRRAISELENYQQIYKLLDIVRSIANVNNSGYGALESMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVHLCGQIEDDKVDSSHGMVDEESSVEDDTVRSLRASPVNTSKDRTSIEDFEIIKPISRGAYGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKIGLINSTDDFSGPSISGTSSLGDNGPTSQSLSKREHRQKHSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGIPPFNAENPQQIFDNIINRDIPWPKVPDEMSYEAHDLIDKLLTENSVQRLGATGAREVKEHPFFKDINWETLARQKAMFIPSAEPQDTSYFMSRYIWNPEDEDFNGGSDFDDHDLTDTCSSSSFSNLQDEDGDECGSLADFCTSALSVKYSFSNFSFKNLSQLASINYDLVVKSSQNSPDVSKPSIP | 1173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5318404 | 5328751 | + | CcPI632755_01g005460.1 | Cco01g0546 | 169408 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g0546 | 1173 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Cco01g0546 | 1173 | MobiDBLite | consensus disorder prediction | 923 | 937 | - | - | |
Cco01g0546 | 1173 | MobiDBLite | consensus disorder prediction | 33 | 48 | - | - | |
Cco01g0546 | 1173 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 471 | 1145 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Cco01g0546 | 1173 | MobiDBLite | consensus disorder prediction | 433 | 452 | - | - | |
Cco01g0546 | 1173 | Gene3D | Transferase(Phosphotransferase) domain 1 | 846 | 1068 | - | - | |
Cco01g0546 | 1173 | MobiDBLite | consensus disorder prediction | 923 | 948 | - | - | |
Cco01g0546 | 1173 | CDD | STKc_MAST_like | 768 | 1055 | - | - | |
Cco01g0546 | 1173 | FunFam | probable serine/threonine protein kinase IREH1 | 760 | 849 | - | - | |
Cco01g0546 | 1173 | SMART | serkin_6 | 762 | 1050 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0546 | 1173 | MobiDBLite | consensus disorder prediction | 78 | 107 | - | - | |
Cco01g0546 | 1173 | ProSiteProfiles | Protein kinase domain profile. | 762 | 1050 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0546 | 1173 | MobiDBLite | consensus disorder prediction | 77 | 109 | - | - | |
Cco01g0546 | 1173 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 1051 | 1153 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0546 | 1173 | Gene3D | Phosphorylase Kinase; domain 1 | 760 | 1077 | - | - | |
Cco01g0546 | 1173 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 881 | 893 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco01g0546 | 1173 | Pfam | Protein kinase domain | 763 | 1050 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g0546 | 1173 | SUPERFAMILY | Protein kinase-like (PK-like) | 759 | 1080 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0546 | Cco-Chr1:5318404 | Cco01g1881 | Cco-Chr1:31319305 | 1.50E-107 | dispersed | |
Cco01g0546 | Cco-Chr1:5318404 | Cco03g1590 | Cco-Chr3:30519130 | 5.10E-68 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86504 | PF00069 | Pkinase | 4.80E-64 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g0546 | K08789 | - | csv:101210442 | 2088.54 |